Strain Fitness in Pseudomonas simiae WCS417 around PS417_08105

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08095 and PS417_08100 are separated by 4 nucleotidesPS417_08100 and PS417_08105 are separated by 64 nucleotidesPS417_08105 and PS417_08110 are separated by 108 nucleotides PS417_08095: PS417_08095 - phosphoglycolate phosphatase, at 1,770,700 to 1,771,371 _08095 PS417_08100: PS417_08100 - 3-demethylubiquinone-9 3-methyltransferase, at 1,771,376 to 1,772,074 _08100 PS417_08105: PS417_08105 - N-ethylammeline chlorohydrolase, at 1,772,139 to 1,773,470 _08105 PS417_08110: PS417_08110 - methylthioribose-1-phosphate isomerase, at 1,773,579 to 1,774,655 _08110 Position (kb) 1772 1773 1774Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1771.139 kb on + strand, within PS417_08095at 1772.086 kb on + strandat 1772.284 kb on + strand, within PS417_08105at 1772.284 kb on + strand, within PS417_08105at 1772.285 kb on - strand, within PS417_08105at 1772.285 kb on - strand, within PS417_08105at 1772.285 kb on - strand, within PS417_08105at 1772.285 kb on - strand, within PS417_08105at 1772.285 kb on - strand, within PS417_08105at 1772.285 kb on - strand, within PS417_08105at 1772.286 kb on + strand, within PS417_08105at 1772.286 kb on + strand, within PS417_08105at 1772.286 kb on + strand, within PS417_08105at 1772.286 kb on + strand, within PS417_08105at 1772.286 kb on + strand, within PS417_08105at 1772.286 kb on + strand, within PS417_08105at 1772.286 kb on + strand, within PS417_08105at 1772.286 kb on + strand, within PS417_08105at 1772.286 kb on + strand, within PS417_08105at 1772.286 kb on + strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.288 kb on + strand, within PS417_08105at 1772.288 kb on + strand, within PS417_08105at 1772.288 kb on + strand, within PS417_08105at 1772.288 kb on + strand, within PS417_08105at 1772.288 kb on + strandat 1772.288 kb on + strand, within PS417_08105at 1772.288 kb on + strand, within PS417_08105at 1772.288 kb on + strand, within PS417_08105at 1772.289 kb on - strand, within PS417_08105at 1772.289 kb on - strand, within PS417_08105at 1772.289 kb on - strand, within PS417_08105at 1772.289 kb on - strand, within PS417_08105at 1772.289 kb on - strand, within PS417_08105at 1772.289 kb on - strand, within PS417_08105at 1772.289 kb on - strand, within PS417_08105at 1772.289 kb on - strand, within PS417_08105at 1772.289 kb on - strand, within PS417_08105at 1772.532 kb on - strand, within PS417_08105at 1772.532 kb on - strand, within PS417_08105at 1772.696 kb on + strand, within PS417_08105at 1772.696 kb on + strand, within PS417_08105at 1772.696 kb on + strand, within PS417_08105at 1772.697 kb on - strand, within PS417_08105at 1772.697 kb on - strandat 1773.073 kb on + strand, within PS417_08105at 1773.073 kb on + strand, within PS417_08105at 1773.073 kb on + strand, within PS417_08105at 1773.073 kb on + strand, within PS417_08105at 1773.073 kb on + strand, within PS417_08105at 1773.073 kb on + strand, within PS417_08105at 1773.073 kb on + strandat 1773.074 kb on - strand, within PS417_08105at 1773.074 kb on - strand, within PS417_08105at 1773.074 kb on - strand, within PS417_08105at 1773.428 kb on + strandat 1773.428 kb on + strandat 1773.428 kb on + strandat 1773.428 kb on + strandat 1773.428 kb on + strandat 1773.429 kb on - strandat 1773.441 kb on + strandat 1773.442 kb on - strandat 1773.442 kb on - strandat 1773.494 kb on - strandat 1773.494 kb on - strandat 1773.495 kb on + strandat 1773.495 kb on + strandat 1773.496 kb on - strandat 1773.512 kb on - strandat 1773.512 kb on - strandat 1773.512 kb on - strandat 1773.542 kb on - strandat 1773.544 kb on - strandat 1773.544 kb on - strandat 1773.696 kb on - strand, within PS417_08110at 1773.843 kb on + strand, within PS417_08110at 1773.843 kb on + strand, within PS417_08110at 1773.844 kb on - strand, within PS417_08110at 1773.844 kb on - strand, within PS417_08110at 1773.844 kb on - strand, within PS417_08110at 1774.027 kb on - strand, within PS417_08110at 1774.164 kb on + strand, within PS417_08110at 1774.164 kb on + strand, within PS417_08110at 1774.164 kb on + strandat 1774.360 kb on - strand, within PS417_08110at 1774.456 kb on + strand, within PS417_08110

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,771,139 + PS417_08095 0.65 -2.0
1,772,086 + -1.0
1,772,284 + PS417_08105 0.11 -1.2
1,772,284 + PS417_08105 0.11 -4.2
1,772,285 - PS417_08105 0.11 -0.3
1,772,285 - PS417_08105 0.11 -1.1
1,772,285 - PS417_08105 0.11 -2.6
1,772,285 - PS417_08105 0.11 -1.7
1,772,285 - PS417_08105 0.11 -0.5
1,772,285 - PS417_08105 0.11 -2.0
1,772,286 + PS417_08105 0.11 -2.7
1,772,286 + PS417_08105 0.11 -4.1
1,772,286 + PS417_08105 0.11 -2.3
1,772,286 + PS417_08105 0.11 -3.4
1,772,286 + PS417_08105 0.11 -1.4
1,772,286 + PS417_08105 0.11 -3.9
1,772,286 + PS417_08105 0.11 -3.1
1,772,286 + PS417_08105 0.11 -2.5
1,772,286 + PS417_08105 0.11 -3.5
1,772,286 + PS417_08105 0.11 -2.4
1,772,287 - PS417_08105 0.11 -4.4
1,772,287 - PS417_08105 0.11 -1.2
1,772,287 - PS417_08105 0.11 -1.7
1,772,287 - PS417_08105 0.11 -0.9
1,772,287 - PS417_08105 0.11 -1.3
1,772,287 - PS417_08105 0.11 -3.7
1,772,287 - PS417_08105 0.11 -2.0
1,772,287 - PS417_08105 0.11 +1.9
1,772,287 - PS417_08105 0.11 -1.8
1,772,287 - PS417_08105 0.11 -4.3
1,772,287 - PS417_08105 0.11 -4.7
1,772,287 - PS417_08105 0.11 -3.0
1,772,287 - PS417_08105 0.11 -3.8
1,772,287 - PS417_08105 0.11 -0.9
1,772,288 + PS417_08105 0.11 -1.4
1,772,288 + PS417_08105 0.11 -2.9
1,772,288 + PS417_08105 0.11 -3.0
1,772,288 + PS417_08105 0.11 -2.1
1,772,288 + +0.1
1,772,288 + PS417_08105 0.11 +0.9
1,772,288 + PS417_08105 0.11 -2.4
1,772,288 + PS417_08105 0.11 -3.8
1,772,289 - PS417_08105 0.11 -2.1
1,772,289 - PS417_08105 0.11 -2.3
1,772,289 - PS417_08105 0.11 -3.1
1,772,289 - PS417_08105 0.11 -2.9
1,772,289 - PS417_08105 0.11 -2.3
1,772,289 - PS417_08105 0.11 +1.1
1,772,289 - PS417_08105 0.11 -1.0
1,772,289 - PS417_08105 0.11 +0.2
1,772,289 - PS417_08105 0.11 -1.8
1,772,532 - PS417_08105 0.30 -0.3
1,772,532 - PS417_08105 0.30 -1.4
1,772,696 + PS417_08105 0.42 -0.5
1,772,696 + PS417_08105 0.42 -2.2
1,772,696 + PS417_08105 0.42 +0.1
1,772,697 - PS417_08105 0.42 +1.9
1,772,697 - +0.5
1,773,073 + PS417_08105 0.70 -2.2
1,773,073 + PS417_08105 0.70 -1.7
1,773,073 + PS417_08105 0.70 -0.0
1,773,073 + PS417_08105 0.70 -0.5
1,773,073 + PS417_08105 0.70 -2.3
1,773,073 + PS417_08105 0.70 -3.1
1,773,073 + -0.9
1,773,074 - PS417_08105 0.70 -0.1
1,773,074 - PS417_08105 0.70 +0.8
1,773,074 - PS417_08105 0.70 +0.4
1,773,428 + -0.9
1,773,428 + -2.2
1,773,428 + -2.7
1,773,428 + -3.1
1,773,428 + -2.8
1,773,429 - -1.5
1,773,441 + -1.9
1,773,442 - +0.5
1,773,442 - +0.1
1,773,494 - +1.3
1,773,494 - -1.4
1,773,495 + -1.7
1,773,495 + -1.5
1,773,496 - +0.2
1,773,512 - -0.3
1,773,512 - +1.8
1,773,512 - -0.2
1,773,542 - -0.5
1,773,544 - -0.1
1,773,544 - -0.8
1,773,696 - PS417_08110 0.11 -1.4
1,773,843 + PS417_08110 0.25 +0.7
1,773,843 + PS417_08110 0.25 -0.4
1,773,844 - PS417_08110 0.25 +0.1
1,773,844 - PS417_08110 0.25 +2.1
1,773,844 - PS417_08110 0.25 -0.5
1,774,027 - PS417_08110 0.42 -0.3
1,774,164 + PS417_08110 0.54 -0.3
1,774,164 + PS417_08110 0.54 -0.7
1,774,164 + -1.7
1,774,360 - PS417_08110 0.73 -2.0
1,774,456 + PS417_08110 0.81 -1.1

Or see this region's nucleotide sequence