Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08095 and PS417_08100 are separated by 4 nucleotides PS417_08100 and PS417_08105 are separated by 64 nucleotides PS417_08105 and PS417_08110 are separated by 108 nucleotides
PS417_08095: PS417_08095 - phosphoglycolate phosphatase, at 1,770,700 to 1,771,371
_08095
PS417_08100: PS417_08100 - 3-demethylubiquinone-9 3-methyltransferase, at 1,771,376 to 1,772,074
_08100
PS417_08105: PS417_08105 - N-ethylammeline chlorohydrolase, at 1,772,139 to 1,773,470
_08105
PS417_08110: PS417_08110 - methylthioribose-1-phosphate isomerase, at 1,773,579 to 1,774,655
_08110
Position (kb)
1772
1773
1774 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1771.139 kb on + strand, within PS417_08095 at 1772.086 kb on + strand at 1772.284 kb on + strand, within PS417_08105 at 1772.284 kb on + strand, within PS417_08105 at 1772.285 kb on - strand, within PS417_08105 at 1772.285 kb on - strand, within PS417_08105 at 1772.285 kb on - strand, within PS417_08105 at 1772.285 kb on - strand, within PS417_08105 at 1772.285 kb on - strand, within PS417_08105 at 1772.285 kb on - strand, within PS417_08105 at 1772.286 kb on + strand, within PS417_08105 at 1772.286 kb on + strand, within PS417_08105 at 1772.286 kb on + strand, within PS417_08105 at 1772.286 kb on + strand, within PS417_08105 at 1772.286 kb on + strand, within PS417_08105 at 1772.286 kb on + strand, within PS417_08105 at 1772.286 kb on + strand, within PS417_08105 at 1772.286 kb on + strand, within PS417_08105 at 1772.286 kb on + strand, within PS417_08105 at 1772.286 kb on + strand, within PS417_08105 at 1772.287 kb on - strand, within PS417_08105 at 1772.287 kb on - strand, within PS417_08105 at 1772.287 kb on - strand, within PS417_08105 at 1772.287 kb on - strand, within PS417_08105 at 1772.287 kb on - strand, within PS417_08105 at 1772.287 kb on - strand, within PS417_08105 at 1772.287 kb on - strand, within PS417_08105 at 1772.287 kb on - strand, within PS417_08105 at 1772.287 kb on - strand, within PS417_08105 at 1772.287 kb on - strand, within PS417_08105 at 1772.287 kb on - strand, within PS417_08105 at 1772.287 kb on - strand, within PS417_08105 at 1772.287 kb on - strand, within PS417_08105 at 1772.287 kb on - strand, within PS417_08105 at 1772.288 kb on + strand, within PS417_08105 at 1772.288 kb on + strand, within PS417_08105 at 1772.288 kb on + strand, within PS417_08105 at 1772.288 kb on + strand, within PS417_08105 at 1772.288 kb on + strand at 1772.288 kb on + strand, within PS417_08105 at 1772.288 kb on + strand, within PS417_08105 at 1772.288 kb on + strand, within PS417_08105 at 1772.289 kb on - strand, within PS417_08105 at 1772.289 kb on - strand, within PS417_08105 at 1772.289 kb on - strand, within PS417_08105 at 1772.289 kb on - strand, within PS417_08105 at 1772.289 kb on - strand, within PS417_08105 at 1772.289 kb on - strand, within PS417_08105 at 1772.289 kb on - strand, within PS417_08105 at 1772.289 kb on - strand, within PS417_08105 at 1772.289 kb on - strand, within PS417_08105 at 1772.532 kb on - strand, within PS417_08105 at 1772.532 kb on - strand, within PS417_08105 at 1772.696 kb on + strand, within PS417_08105 at 1772.696 kb on + strand, within PS417_08105 at 1772.696 kb on + strand, within PS417_08105 at 1772.697 kb on - strand, within PS417_08105 at 1772.697 kb on - strand at 1773.073 kb on + strand, within PS417_08105 at 1773.073 kb on + strand, within PS417_08105 at 1773.073 kb on + strand, within PS417_08105 at 1773.073 kb on + strand, within PS417_08105 at 1773.073 kb on + strand, within PS417_08105 at 1773.073 kb on + strand, within PS417_08105 at 1773.073 kb on + strand at 1773.074 kb on - strand, within PS417_08105 at 1773.074 kb on - strand, within PS417_08105 at 1773.074 kb on - strand, within PS417_08105 at 1773.428 kb on + strand at 1773.428 kb on + strand at 1773.428 kb on + strand at 1773.428 kb on + strand at 1773.428 kb on + strand at 1773.429 kb on - strand at 1773.441 kb on + strand at 1773.442 kb on - strand at 1773.442 kb on - strand at 1773.494 kb on - strand at 1773.494 kb on - strand at 1773.495 kb on + strand at 1773.495 kb on + strand at 1773.496 kb on - strand at 1773.512 kb on - strand at 1773.512 kb on - strand at 1773.512 kb on - strand at 1773.542 kb on - strand at 1773.544 kb on - strand at 1773.544 kb on - strand at 1773.696 kb on - strand, within PS417_08110 at 1773.843 kb on + strand, within PS417_08110 at 1773.843 kb on + strand, within PS417_08110 at 1773.844 kb on - strand, within PS417_08110 at 1773.844 kb on - strand, within PS417_08110 at 1773.844 kb on - strand, within PS417_08110 at 1774.027 kb on - strand, within PS417_08110 at 1774.164 kb on + strand, within PS417_08110 at 1774.164 kb on + strand, within PS417_08110 at 1774.164 kb on + strand at 1774.360 kb on - strand, within PS417_08110 at 1774.456 kb on + strand, within PS417_08110
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,771,139 + PS417_08095 0.65 -2.0 1,772,086 + -1.0 1,772,284 + PS417_08105 0.11 -1.2 1,772,284 + PS417_08105 0.11 -4.2 1,772,285 - PS417_08105 0.11 -0.3 1,772,285 - PS417_08105 0.11 -1.1 1,772,285 - PS417_08105 0.11 -2.6 1,772,285 - PS417_08105 0.11 -1.7 1,772,285 - PS417_08105 0.11 -0.5 1,772,285 - PS417_08105 0.11 -2.0 1,772,286 + PS417_08105 0.11 -2.7 1,772,286 + PS417_08105 0.11 -4.1 1,772,286 + PS417_08105 0.11 -2.3 1,772,286 + PS417_08105 0.11 -3.4 1,772,286 + PS417_08105 0.11 -1.4 1,772,286 + PS417_08105 0.11 -3.9 1,772,286 + PS417_08105 0.11 -3.1 1,772,286 + PS417_08105 0.11 -2.5 1,772,286 + PS417_08105 0.11 -3.5 1,772,286 + PS417_08105 0.11 -2.4 1,772,287 - PS417_08105 0.11 -4.4 1,772,287 - PS417_08105 0.11 -1.2 1,772,287 - PS417_08105 0.11 -1.7 1,772,287 - PS417_08105 0.11 -0.9 1,772,287 - PS417_08105 0.11 -1.3 1,772,287 - PS417_08105 0.11 -3.7 1,772,287 - PS417_08105 0.11 -2.0 1,772,287 - PS417_08105 0.11 +1.9 1,772,287 - PS417_08105 0.11 -1.8 1,772,287 - PS417_08105 0.11 -4.3 1,772,287 - PS417_08105 0.11 -4.7 1,772,287 - PS417_08105 0.11 -3.0 1,772,287 - PS417_08105 0.11 -3.8 1,772,287 - PS417_08105 0.11 -0.9 1,772,288 + PS417_08105 0.11 -1.4 1,772,288 + PS417_08105 0.11 -2.9 1,772,288 + PS417_08105 0.11 -3.0 1,772,288 + PS417_08105 0.11 -2.1 1,772,288 + +0.1 1,772,288 + PS417_08105 0.11 +0.9 1,772,288 + PS417_08105 0.11 -2.4 1,772,288 + PS417_08105 0.11 -3.8 1,772,289 - PS417_08105 0.11 -2.1 1,772,289 - PS417_08105 0.11 -2.3 1,772,289 - PS417_08105 0.11 -3.1 1,772,289 - PS417_08105 0.11 -2.9 1,772,289 - PS417_08105 0.11 -2.3 1,772,289 - PS417_08105 0.11 +1.1 1,772,289 - PS417_08105 0.11 -1.0 1,772,289 - PS417_08105 0.11 +0.2 1,772,289 - PS417_08105 0.11 -1.8 1,772,532 - PS417_08105 0.30 -0.3 1,772,532 - PS417_08105 0.30 -1.4 1,772,696 + PS417_08105 0.42 -0.5 1,772,696 + PS417_08105 0.42 -2.2 1,772,696 + PS417_08105 0.42 +0.1 1,772,697 - PS417_08105 0.42 +1.9 1,772,697 - +0.5 1,773,073 + PS417_08105 0.70 -2.2 1,773,073 + PS417_08105 0.70 -1.7 1,773,073 + PS417_08105 0.70 -0.0 1,773,073 + PS417_08105 0.70 -0.5 1,773,073 + PS417_08105 0.70 -2.3 1,773,073 + PS417_08105 0.70 -3.1 1,773,073 + -0.9 1,773,074 - PS417_08105 0.70 -0.1 1,773,074 - PS417_08105 0.70 +0.8 1,773,074 - PS417_08105 0.70 +0.4 1,773,428 + -0.9 1,773,428 + -2.2 1,773,428 + -2.7 1,773,428 + -3.1 1,773,428 + -2.8 1,773,429 - -1.5 1,773,441 + -1.9 1,773,442 - +0.5 1,773,442 - +0.1 1,773,494 - +1.3 1,773,494 - -1.4 1,773,495 + -1.7 1,773,495 + -1.5 1,773,496 - +0.2 1,773,512 - -0.3 1,773,512 - +1.8 1,773,512 - -0.2 1,773,542 - -0.5 1,773,544 - -0.1 1,773,544 - -0.8 1,773,696 - PS417_08110 0.11 -1.4 1,773,843 + PS417_08110 0.25 +0.7 1,773,843 + PS417_08110 0.25 -0.4 1,773,844 - PS417_08110 0.25 +0.1 1,773,844 - PS417_08110 0.25 +2.1 1,773,844 - PS417_08110 0.25 -0.5 1,774,027 - PS417_08110 0.42 -0.3 1,774,164 + PS417_08110 0.54 -0.3 1,774,164 + PS417_08110 0.54 -0.7 1,774,164 + -1.7 1,774,360 - PS417_08110 0.73 -2.0 1,774,456 + PS417_08110 0.81 -1.1
Or see this region's nucleotide sequence