Strain Fitness in Pseudomonas simiae WCS417 around PS417_05885

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05880 and PS417_05885 are separated by 288 nucleotidesPS417_05885 and PS417_05890 are separated by 127 nucleotides PS417_05880: PS417_05880 - ribosomal protein S12 methylthiotransferase, at 1,304,763 to 1,306,103 _05880 PS417_05885: PS417_05885 - potassium transporter Kup, at 1,306,392 to 1,308,293 _05885 PS417_05890: PS417_05890 - oxidoreductase, at 1,308,421 to 1,309,527 _05890 Position (kb) 1306 1307 1308 1309Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1305.573 kb on + strand, within PS417_05880at 1305.667 kb on + strand, within PS417_05880at 1305.781 kb on + strand, within PS417_05880at 1305.782 kb on - strand, within PS417_05880at 1305.973 kb on + strandat 1305.991 kb on + strandat 1306.226 kb on + strandat 1306.226 kb on + strandat 1306.281 kb on - strandat 1306.333 kb on + strandat 1306.355 kb on + strandat 1306.355 kb on + strandat 1306.356 kb on - strandat 1306.406 kb on + strandat 1306.451 kb on + strandat 1306.452 kb on - strandat 1306.452 kb on - strandat 1306.479 kb on + strandat 1306.507 kb on - strandat 1306.620 kb on + strand, within PS417_05885at 1306.621 kb on - strand, within PS417_05885at 1306.621 kb on - strand, within PS417_05885at 1306.621 kb on - strand, within PS417_05885at 1306.980 kb on + strand, within PS417_05885at 1306.980 kb on + strand, within PS417_05885at 1306.980 kb on + strand, within PS417_05885at 1307.200 kb on - strand, within PS417_05885at 1307.257 kb on - strand, within PS417_05885at 1307.382 kb on + strand, within PS417_05885at 1307.437 kb on - strand, within PS417_05885at 1307.486 kb on - strand, within PS417_05885at 1307.958 kb on + strand, within PS417_05885at 1307.959 kb on - strand, within PS417_05885at 1307.959 kb on - strand, within PS417_05885at 1308.129 kb on + strandat 1308.130 kb on - strandat 1308.130 kb on - strandat 1308.291 kb on + strandat 1308.292 kb on - strandat 1308.368 kb on + strandat 1308.368 kb on + strandat 1308.376 kb on - strandat 1308.376 kb on - strandat 1308.391 kb on - strandat 1308.442 kb on + strandat 1308.443 kb on - strandat 1308.443 kb on - strandat 1308.500 kb on - strandat 1308.500 kb on - strandat 1308.964 kb on + strand, within PS417_05890

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,305,573 + PS417_05880 0.60 -0.9
1,305,667 + PS417_05880 0.67 +0.2
1,305,781 + PS417_05880 0.76 -1.0
1,305,782 - PS417_05880 0.76 +0.8
1,305,973 + -1.0
1,305,991 + +0.7
1,306,226 + -0.6
1,306,226 + -0.2
1,306,281 - -2.4
1,306,333 + +0.2
1,306,355 + -0.6
1,306,355 + -0.0
1,306,356 - -1.9
1,306,406 + -4.4
1,306,451 + -0.3
1,306,452 - -2.1
1,306,452 - -2.8
1,306,479 + -1.1
1,306,507 - -4.0
1,306,620 + PS417_05885 0.12 -0.2
1,306,621 - PS417_05885 0.12 -3.1
1,306,621 - PS417_05885 0.12 -3.6
1,306,621 - PS417_05885 0.12 -1.7
1,306,980 + PS417_05885 0.31 -3.1
1,306,980 + PS417_05885 0.31 -3.6
1,306,980 + PS417_05885 0.31 -5.6
1,307,200 - PS417_05885 0.42 -4.2
1,307,257 - PS417_05885 0.45 -1.6
1,307,382 + PS417_05885 0.52 -3.3
1,307,437 - PS417_05885 0.55 -3.6
1,307,486 - PS417_05885 0.58 -3.2
1,307,958 + PS417_05885 0.82 -1.9
1,307,959 - PS417_05885 0.82 -4.6
1,307,959 - PS417_05885 0.82 -1.7
1,308,129 + -2.2
1,308,130 - -4.7
1,308,130 - -2.7
1,308,291 + +1.9
1,308,292 - -2.1
1,308,368 + -0.4
1,308,368 + -0.8
1,308,376 - +1.3
1,308,376 - +1.4
1,308,391 - -3.1
1,308,442 + +0.0
1,308,443 - +1.2
1,308,443 - +2.0
1,308,500 - +0.1
1,308,500 - +0.9
1,308,964 + PS417_05890 0.49 -1.1

Or see this region's nucleotide sequence