Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_05250 and PS417_05255 are separated by 11 nucleotides PS417_05255 and PS417_05260 are separated by 140 nucleotides
PS417_05250: PS417_05250 - hypothetical protein, at 1,164,883 to 1,166,187
_05250
PS417_05255: PS417_05255 - hypothetical protein, at 1,166,199 to 1,167,077
_05255
PS417_05260: PS417_05260 - MFS transporter, at 1,167,218 to 1,168,558
_05260
Position (kb)
1166
1167
1168 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1165.445 kb on - strand, within PS417_05250 at 1165.626 kb on - strand, within PS417_05250 at 1165.817 kb on + strand, within PS417_05250 at 1166.204 kb on + strand at 1166.516 kb on + strand, within PS417_05255 at 1166.566 kb on - strand, within PS417_05255 at 1166.632 kb on - strand, within PS417_05255 at 1166.667 kb on + strand, within PS417_05255 at 1166.668 kb on - strand, within PS417_05255 at 1166.670 kb on + strand, within PS417_05255 at 1166.670 kb on + strand, within PS417_05255 at 1166.670 kb on + strand, within PS417_05255 at 1166.671 kb on - strand, within PS417_05255 at 1166.707 kb on - strand, within PS417_05255 at 1167.228 kb on - strand at 1167.330 kb on - strand at 1167.330 kb on - strand at 1167.330 kb on - strand at 1167.494 kb on - strand, within PS417_05260 at 1167.494 kb on - strand, within PS417_05260 at 1167.494 kb on - strand, within PS417_05260 at 1167.627 kb on - strand, within PS417_05260 at 1167.627 kb on - strand, within PS417_05260 at 1167.641 kb on + strand, within PS417_05260 at 1167.642 kb on - strand, within PS417_05260 at 1167.642 kb on - strand, within PS417_05260 at 1167.642 kb on - strand, within PS417_05260 at 1167.685 kb on + strand, within PS417_05260 at 1167.689 kb on + strand, within PS417_05260 at 1167.689 kb on + strand at 1167.690 kb on - strand, within PS417_05260 at 1167.690 kb on - strand, within PS417_05260 at 1167.691 kb on + strand, within PS417_05260 at 1167.697 kb on - strand, within PS417_05260 at 1167.927 kb on - strand, within PS417_05260
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,165,445 - PS417_05250 0.43 -0.1 1,165,626 - PS417_05250 0.57 +0.7 1,165,817 + PS417_05250 0.72 -2.0 1,166,204 + +0.1 1,166,516 + PS417_05255 0.36 -2.8 1,166,566 - PS417_05255 0.42 +2.3 1,166,632 - PS417_05255 0.49 +0.6 1,166,667 + PS417_05255 0.53 +1.1 1,166,668 - PS417_05255 0.53 +0.4 1,166,670 + PS417_05255 0.54 +1.7 1,166,670 + PS417_05255 0.54 -2.2 1,166,670 + PS417_05255 0.54 +0.3 1,166,671 - PS417_05255 0.54 -1.3 1,166,707 - PS417_05255 0.58 -1.3 1,167,228 - +0.7 1,167,330 - -0.9 1,167,330 - +0.1 1,167,330 - +0.3 1,167,494 - PS417_05260 0.21 -0.1 1,167,494 - PS417_05260 0.21 -0.3 1,167,494 - PS417_05260 0.21 -1.8 1,167,627 - PS417_05260 0.30 -0.5 1,167,627 - PS417_05260 0.30 -0.3 1,167,641 + PS417_05260 0.32 +1.5 1,167,642 - PS417_05260 0.32 +0.5 1,167,642 - PS417_05260 0.32 -0.1 1,167,642 - PS417_05260 0.32 +1.2 1,167,685 + PS417_05260 0.35 +0.7 1,167,689 + PS417_05260 0.35 +0.1 1,167,689 + +0.5 1,167,690 - PS417_05260 0.35 +1.0 1,167,690 - PS417_05260 0.35 -2.3 1,167,691 + PS417_05260 0.35 +1.2 1,167,697 - PS417_05260 0.36 +1.4 1,167,927 - PS417_05260 0.53 -2.6
Or see this region's nucleotide sequence