Strain Fitness in Pseudomonas simiae WCS417 around PS417_05215

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05210 and PS417_05215 overlap by 1 nucleotidesPS417_05215 and PS417_05220 are separated by 79 nucleotides PS417_05210: PS417_05210 - copper oxidase, at 1,156,099 to 1,157,475 _05210 PS417_05215: PS417_05215 - zinc-binding protein, at 1,157,475 to 1,157,972 _05215 PS417_05220: PS417_05220 - tRNA methyltransferase, at 1,158,052 to 1,159,008 _05220 Position (kb) 1157 1158Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1156.507 kb on + strand, within PS417_05210at 1156.508 kb on - strand, within PS417_05210at 1156.513 kb on + strand, within PS417_05210at 1156.514 kb on - strand, within PS417_05210at 1156.604 kb on - strand, within PS417_05210at 1156.804 kb on + strand, within PS417_05210at 1156.805 kb on - strand, within PS417_05210at 1156.840 kb on + strand, within PS417_05210at 1156.888 kb on + strand, within PS417_05210at 1157.230 kb on + strand, within PS417_05210at 1157.231 kb on - strand, within PS417_05210at 1157.233 kb on - strand, within PS417_05210at 1157.347 kb on + strandat 1157.347 kb on + strandat 1157.347 kb on + strandat 1157.348 kb on - strandat 1158.149 kb on + strand, within PS417_05220at 1158.149 kb on + strand, within PS417_05220at 1158.212 kb on - strand, within PS417_05220at 1158.275 kb on - strand, within PS417_05220at 1158.275 kb on - strand, within PS417_05220at 1158.280 kb on - strand, within PS417_05220at 1158.280 kb on - strand, within PS417_05220at 1158.423 kb on - strand, within PS417_05220at 1158.614 kb on + strand, within PS417_05220at 1158.614 kb on + strand, within PS417_05220at 1158.615 kb on - strand, within PS417_05220at 1158.615 kb on - strand, within PS417_05220at 1158.615 kb on - strand, within PS417_05220

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,156,507 + PS417_05210 0.30 -1.1
1,156,508 - PS417_05210 0.30 -2.3
1,156,513 + PS417_05210 0.30 +1.4
1,156,514 - PS417_05210 0.30 -1.9
1,156,604 - PS417_05210 0.37 -4.6
1,156,804 + PS417_05210 0.51 -1.2
1,156,805 - PS417_05210 0.51 +0.1
1,156,840 + PS417_05210 0.54 -1.2
1,156,888 + PS417_05210 0.57 +0.5
1,157,230 + PS417_05210 0.82 -1.1
1,157,231 - PS417_05210 0.82 -1.6
1,157,233 - PS417_05210 0.82 -1.3
1,157,347 + -0.5
1,157,347 + -0.9
1,157,347 + -1.5
1,157,348 - -0.7
1,158,149 + PS417_05220 0.10 -3.0
1,158,149 + PS417_05220 0.10 +0.0
1,158,212 - PS417_05220 0.17 +1.1
1,158,275 - PS417_05220 0.23 -1.1
1,158,275 - PS417_05220 0.23 -0.2
1,158,280 - PS417_05220 0.24 -1.1
1,158,280 - PS417_05220 0.24 +3.3
1,158,423 - PS417_05220 0.39 -0.5
1,158,614 + PS417_05220 0.59 +0.5
1,158,614 + PS417_05220 0.59 -2.5
1,158,615 - PS417_05220 0.59 -2.0
1,158,615 - PS417_05220 0.59 -0.2
1,158,615 - PS417_05220 0.59 -1.4

Or see this region's nucleotide sequence