Strain Fitness in Pseudomonas putida KT2440 around PP_0579

Experiment: Growth at 30C; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0577 and PP_0578 overlap by 38 nucleotidesPP_0578 and PP_0579 overlap by 4 nucleotidesPP_0579 and PP_0580 overlap by 16 nucleotidesPP_0580 and PP_0581 are separated by 2 nucleotides PP_0577: PP_0577 - conserved protein of unknown function, at 675,003 to 675,698 _0577 PP_0578: PP_0578 - putative Methyltransferase, at 675,661 to 676,410 _0578 PP_0579: PP_0579 - conserved protein of unknown function, at 676,407 to 676,805 _0579 PP_0580: PP_0580 - MaoC domain protein, at 676,790 to 677,641 _0580 PP_0581: PP_0581 - 3-oxoacyl-(Acyl-carrier-protein) reductase, at 677,644 to 679,017 _0581 Position (kb) 676 677Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 675.499 kb on + strand, within PP_0577at 675.499 kb on + strand, within PP_0577at 675.569 kb on - strand, within PP_0577at 675.569 kb on - strand, within PP_0577at 675.569 kb on - strand, within PP_0577at 675.569 kb on - strand, within PP_0577at 675.569 kb on - strand, within PP_0577at 675.631 kb on + strandat 675.631 kb on + strandat 675.640 kb on + strandat 675.641 kb on - strandat 675.641 kb on - strandat 675.641 kb on - strandat 675.641 kb on - strandat 675.641 kb on - strandat 675.641 kb on - strandat 675.786 kb on + strand, within PP_0578at 675.786 kb on + strand, within PP_0578at 675.786 kb on + strand, within PP_0578at 675.786 kb on + strand, within PP_0578at 675.786 kb on + strand, within PP_0578at 675.786 kb on + strand, within PP_0578at 675.786 kb on + strand, within PP_0578at 675.787 kb on - strand, within PP_0578at 675.787 kb on - strand, within PP_0578at 675.787 kb on - strand, within PP_0578at 675.788 kb on + strand, within PP_0578at 675.788 kb on + strand, within PP_0578at 675.788 kb on + strand, within PP_0578at 675.788 kb on + strand, within PP_0578at 675.789 kb on - strand, within PP_0578at 675.789 kb on - strand, within PP_0578at 675.834 kb on + strand, within PP_0578at 675.834 kb on + strand, within PP_0578at 675.834 kb on + strand, within PP_0578at 675.835 kb on - strand, within PP_0578at 675.835 kb on - strand, within PP_0578at 675.835 kb on - strand, within PP_0578at 675.977 kb on + strand, within PP_0578at 675.977 kb on + strand, within PP_0578at 676.358 kb on + strandat 676.358 kb on + strandat 676.359 kb on - strandat 676.359 kb on - strandat 676.498 kb on + strand, within PP_0579at 676.498 kb on + strand, within PP_0579at 676.498 kb on + strand, within PP_0579at 676.724 kb on + strand, within PP_0579at 676.724 kb on + strand, within PP_0579at 676.724 kb on + strand, within PP_0579at 676.724 kb on + strand, within PP_0579at 676.734 kb on + strand, within PP_0579at 676.734 kb on + strand, within PP_0579at 676.734 kb on + strand, within PP_0579at 676.734 kb on + strand, within PP_0579at 676.734 kb on + strand, within PP_0579at 676.735 kb on - strand, within PP_0579at 676.735 kb on - strand, within PP_0579at 676.735 kb on - strand, within PP_0579at 676.816 kb on + strandat 676.816 kb on + strandat 676.816 kb on + strandat 676.817 kb on - strandat 676.817 kb on - strandat 676.935 kb on + strand, within PP_0580at 676.936 kb on - strand, within PP_0580at 676.936 kb on - strand, within PP_0580at 677.054 kb on - strand, within PP_0580at 677.061 kb on + strand, within PP_0580at 677.061 kb on + strand, within PP_0580at 677.062 kb on - strand, within PP_0580at 677.082 kb on + strand, within PP_0580at 677.363 kb on + strand, within PP_0580at 677.364 kb on - strand, within PP_0580at 677.442 kb on + strand, within PP_0580at 677.442 kb on + strand, within PP_0580at 677.442 kb on + strand, within PP_0580at 677.442 kb on + strand, within PP_0580at 677.443 kb on - strand, within PP_0580at 677.443 kb on - strand, within PP_0580at 677.443 kb on - strand, within PP_0580at 677.443 kb on - strand, within PP_0580at 677.443 kb on - strand, within PP_0580at 677.589 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 30C; with MOPS
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675,499 + PP_0577 0.71 -1.3
675,499 + PP_0577 0.71 +0.8
675,569 - PP_0577 0.81 +1.6
675,569 - PP_0577 0.81 +0.0
675,569 - PP_0577 0.81 -1.7
675,569 - PP_0577 0.81 +1.7
675,569 - PP_0577 0.81 +1.8
675,631 + -2.1
675,631 + -3.4
675,640 + +0.4
675,641 - +1.8
675,641 - +0.3
675,641 - +1.0
675,641 - -0.2
675,641 - +0.4
675,641 - -0.3
675,786 + PP_0578 0.17 +0.6
675,786 + PP_0578 0.17 +0.1
675,786 + PP_0578 0.17 -3.4
675,786 + PP_0578 0.17 -1.9
675,786 + PP_0578 0.17 -1.1
675,786 + PP_0578 0.17 +0.3
675,786 + PP_0578 0.17 -0.5
675,787 - PP_0578 0.17 +2.1
675,787 - PP_0578 0.17 -1.6
675,787 - PP_0578 0.17 -0.5
675,788 + PP_0578 0.17 -0.8
675,788 + PP_0578 0.17 +0.7
675,788 + PP_0578 0.17 +2.1
675,788 + PP_0578 0.17 +0.5
675,789 - PP_0578 0.17 +1.3
675,789 - PP_0578 0.17 -0.9
675,834 + PP_0578 0.23 +1.6
675,834 + PP_0578 0.23 -0.0
675,834 + PP_0578 0.23 +0.4
675,835 - PP_0578 0.23 +0.5
675,835 - PP_0578 0.23 +0.7
675,835 - PP_0578 0.23 +0.2
675,977 + PP_0578 0.42 -0.4
675,977 + PP_0578 0.42 +0.3
676,358 + -0.6
676,358 + +1.1
676,359 - -0.2
676,359 - -0.2
676,498 + PP_0579 0.23 +0.6
676,498 + PP_0579 0.23 +0.8
676,498 + PP_0579 0.23 +0.9
676,724 + PP_0579 0.79 +2.5
676,724 + PP_0579 0.79 +0.2
676,724 + PP_0579 0.79 -0.1
676,724 + PP_0579 0.79 +1.6
676,734 + PP_0579 0.82 +1.0
676,734 + PP_0579 0.82 +1.4
676,734 + PP_0579 0.82 +0.6
676,734 + PP_0579 0.82 -1.1
676,734 + PP_0579 0.82 +0.4
676,735 - PP_0579 0.82 +0.8
676,735 - PP_0579 0.82 -0.3
676,735 - PP_0579 0.82 +2.1
676,816 + +0.2
676,816 + -0.9
676,816 + +1.0
676,817 - +0.1
676,817 - -1.2
676,935 + PP_0580 0.17 +1.2
676,936 - PP_0580 0.17 -1.2
676,936 - PP_0580 0.17 -0.3
677,054 - PP_0580 0.31 -1.7
677,061 + PP_0580 0.32 +0.4
677,061 + PP_0580 0.32 +0.7
677,062 - PP_0580 0.32 +1.2
677,082 + PP_0580 0.34 +1.0
677,363 + PP_0580 0.67 -0.2
677,364 - PP_0580 0.67 +0.2
677,442 + PP_0580 0.77 -0.2
677,442 + PP_0580 0.77 -0.6
677,442 + PP_0580 0.77 -1.2
677,442 + PP_0580 0.77 -2.4
677,443 - PP_0580 0.77 -0.2
677,443 - PP_0580 0.77 -2.7
677,443 - PP_0580 0.77 -0.6
677,443 - PP_0580 0.77 +0.2
677,443 - PP_0580 0.77 -1.1
677,589 + -1.4

Or see this region's nucleotide sequence