Strain Fitness in Pseudomonas putida KT2440 around PP_0573

Experiment: Growth at 30C; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0572 and PP_0573 are separated by 32 nucleotidesPP_0573 and PP_0574 are separated by 72 nucleotidesPP_0574 and PP_0575 are separated by 118 nucleotides PP_0572: PP_0572 - peptidoglycan glycosyltransferase, at 668,559 to 670,913 _0572 PP_0573: PP_0573 - conserved protein of unknown function, at 670,946 to 672,670 _0573 PP_0574: PP_0574 - DNA-binding response regulator, LuxR family, at 672,743 to 673,519 _0574 PP_0575: PP_0575 - conserved membrane protein of unknown function, at 673,638 to 674,108 _0575 Position (kb) 670 671 672 673Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 670.035 kb on - strand, within PP_0572at 670.035 kb on - strand, within PP_0572at 670.178 kb on - strand, within PP_0572at 670.178 kb on - strand, within PP_0572at 670.483 kb on + strand, within PP_0572at 670.483 kb on + strand, within PP_0572at 670.483 kb on + strand, within PP_0572at 670.483 kb on + strand, within PP_0572at 670.484 kb on - strand, within PP_0572at 670.738 kb on + strandat 670.738 kb on + strandat 670.738 kb on + strandat 670.739 kb on - strandat 670.911 kb on + strandat 670.911 kb on + strandat 670.911 kb on + strandat 670.911 kb on + strandat 670.911 kb on + strandat 670.911 kb on + strandat 670.912 kb on - strandat 670.941 kb on + strandat 670.941 kb on + strandat 670.942 kb on - strandat 671.005 kb on + strandat 671.006 kb on - strandat 671.096 kb on + strandat 671.096 kb on + strandat 671.097 kb on - strandat 671.097 kb on - strandat 671.139 kb on - strand, within PP_0573at 671.160 kb on + strand, within PP_0573at 671.160 kb on + strand, within PP_0573at 671.161 kb on - strand, within PP_0573at 671.282 kb on + strand, within PP_0573at 671.282 kb on + strand, within PP_0573at 671.282 kb on + strand, within PP_0573at 671.331 kb on - strand, within PP_0573at 671.331 kb on - strand, within PP_0573at 671.331 kb on - strand, within PP_0573at 671.331 kb on - strand, within PP_0573at 671.370 kb on - strand, within PP_0573at 671.381 kb on + strand, within PP_0573at 671.381 kb on + strand, within PP_0573at 671.381 kb on + strand, within PP_0573at 671.381 kb on + strand, within PP_0573at 671.382 kb on - strand, within PP_0573at 671.382 kb on - strand, within PP_0573at 671.382 kb on - strand, within PP_0573at 671.387 kb on + strand, within PP_0573at 671.388 kb on - strand, within PP_0573at 671.388 kb on - strand, within PP_0573at 671.444 kb on + strand, within PP_0573at 671.445 kb on - strand, within PP_0573at 671.445 kb on - strand, within PP_0573at 671.448 kb on + strand, within PP_0573at 671.448 kb on + strand, within PP_0573at 671.448 kb on + strand, within PP_0573at 671.448 kb on + strand, within PP_0573at 671.448 kb on + strand, within PP_0573at 671.448 kb on + strand, within PP_0573at 671.448 kb on + strand, within PP_0573at 671.449 kb on - strand, within PP_0573at 671.457 kb on - strand, within PP_0573at 671.492 kb on + strand, within PP_0573at 671.493 kb on - strand, within PP_0573at 671.493 kb on - strand, within PP_0573at 671.558 kb on + strand, within PP_0573at 671.559 kb on - strand, within PP_0573at 671.559 kb on - strand, within PP_0573at 671.807 kb on + strandat 671.807 kb on + strand, within PP_0573at 671.811 kb on - strand, within PP_0573at 671.825 kb on + strand, within PP_0573at 671.826 kb on - strand, within PP_0573at 671.826 kb on - strand, within PP_0573at 671.826 kb on - strand, within PP_0573at 671.835 kb on - strand, within PP_0573at 671.835 kb on - strand, within PP_0573at 671.904 kb on + strand, within PP_0573at 671.904 kb on + strand, within PP_0573at 671.904 kb on + strand, within PP_0573at 671.905 kb on - strand, within PP_0573at 671.955 kb on - strand, within PP_0573at 672.023 kb on + strand, within PP_0573at 672.023 kb on + strand, within PP_0573at 672.080 kb on + strand, within PP_0573at 672.080 kb on + strand, within PP_0573at 672.089 kb on + strand, within PP_0573at 672.089 kb on + strand, within PP_0573at 672.089 kb on + strand, within PP_0573at 672.089 kb on + strand, within PP_0573at 672.089 kb on + strand, within PP_0573at 672.089 kb on + strand, within PP_0573at 672.089 kb on + strand, within PP_0573at 672.089 kb on + strand, within PP_0573at 672.089 kb on + strand, within PP_0573at 672.090 kb on - strand, within PP_0573at 672.090 kb on - strand, within PP_0573at 672.090 kb on - strand, within PP_0573at 672.090 kb on - strand, within PP_0573at 672.090 kb on - strand, within PP_0573at 672.090 kb on - strand, within PP_0573at 672.210 kb on - strand, within PP_0573at 672.210 kb on - strand, within PP_0573at 672.299 kb on + strand, within PP_0573at 672.299 kb on + strand, within PP_0573at 672.299 kb on + strand, within PP_0573at 672.413 kb on + strand, within PP_0573at 672.425 kb on + strand, within PP_0573at 672.426 kb on - strand, within PP_0573at 672.426 kb on - strand, within PP_0573at 672.439 kb on + strand, within PP_0573at 672.440 kb on - strand, within PP_0573at 672.440 kb on - strand, within PP_0573at 672.464 kb on + strand, within PP_0573at 672.464 kb on + strand, within PP_0573at 672.464 kb on + strand, within PP_0573at 672.465 kb on - strand, within PP_0573at 672.496 kb on + strand, within PP_0573at 672.497 kb on - strand, within PP_0573at 672.669 kb on - strandat 672.669 kb on - strandat 672.679 kb on + strandat 672.679 kb on + strandat 672.679 kb on + strandat 672.679 kb on + strandat 672.679 kb on + strandat 672.679 kb on + strandat 672.680 kb on - strandat 672.680 kb on - strandat 672.680 kb on - strandat 672.728 kb on - strandat 672.728 kb on - strandat 672.728 kb on - strandat 672.820 kb on + strandat 672.820 kb on + strandat 672.820 kb on + strandat 672.820 kb on + strandat 672.821 kb on - strand, within PP_0574at 672.821 kb on - strand, within PP_0574at 672.836 kb on + strand, within PP_0574at 672.836 kb on + strandat 672.849 kb on + strand, within PP_0574at 672.849 kb on + strand, within PP_0574at 672.849 kb on + strand, within PP_0574at 672.849 kb on + strand, within PP_0574at 672.850 kb on - strand, within PP_0574at 672.850 kb on - strand, within PP_0574at 672.850 kb on - strand, within PP_0574at 672.850 kb on - strand, within PP_0574at 672.850 kb on - strand, within PP_0574at 672.850 kb on - strand, within PP_0574at 672.897 kb on + strand, within PP_0574at 672.898 kb on - strand, within PP_0574at 672.917 kb on + strand, within PP_0574at 673.191 kb on + strand, within PP_0574at 673.191 kb on + strand, within PP_0574at 673.191 kb on + strand, within PP_0574at 673.192 kb on - strand, within PP_0574at 673.192 kb on - strand, within PP_0574at 673.194 kb on + strand, within PP_0574at 673.194 kb on + strand, within PP_0574at 673.195 kb on - strand, within PP_0574at 673.195 kb on - strand, within PP_0574at 673.215 kb on - strand, within PP_0574at 673.215 kb on - strand, within PP_0574at 673.380 kb on + strand, within PP_0574at 673.380 kb on + strand, within PP_0574at 673.380 kb on + strand, within PP_0574at 673.380 kb on + strand, within PP_0574at 673.380 kb on + strand, within PP_0574at 673.380 kb on + strand, within PP_0574at 673.380 kb on + strand, within PP_0574at 673.381 kb on - strand, within PP_0574at 673.381 kb on - strand, within PP_0574at 673.381 kb on - strand, within PP_0574at 673.381 kb on - strand, within PP_0574at 673.425 kb on + strand, within PP_0574at 673.425 kb on + strand, within PP_0574at 673.425 kb on + strand, within PP_0574at 673.425 kb on + strand, within PP_0574at 673.425 kb on + strand, within PP_0574at 673.426 kb on - strand, within PP_0574at 673.426 kb on - strand, within PP_0574at 673.426 kb on - strandat 673.426 kb on - strand, within PP_0574at 673.426 kb on - strand, within PP_0574at 673.496 kb on + strandat 673.496 kb on + strandat 673.497 kb on - strandat 673.497 kb on - strandat 673.537 kb on + strandat 673.538 kb on - strandat 673.539 kb on + strandat 673.574 kb on + strandat 673.574 kb on + strandat 673.575 kb on - strandat 673.580 kb on + strandat 673.581 kb on - strandat 673.597 kb on + strandat 673.597 kb on + strandat 673.597 kb on + strandat 673.598 kb on - strandat 673.598 kb on - strandat 673.598 kb on - strandat 673.601 kb on + strandat 673.601 kb on + strandat 673.601 kb on + strandat 673.601 kb on + strandat 673.601 kb on + strandat 673.601 kb on + strandat 673.601 kb on + strandat 673.602 kb on - strandat 673.602 kb on - strandat 673.602 kb on - strandat 673.612 kb on + strandat 673.612 kb on + strandat 673.612 kb on + strandat 673.613 kb on - strandat 673.613 kb on - strandat 673.613 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 30C; with MOPS
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670,035 - PP_0572 0.63 -1.8
670,035 - PP_0572 0.63 -1.0
670,178 - PP_0572 0.69 -1.0
670,178 - PP_0572 0.69 -0.7
670,483 + PP_0572 0.82 -0.0
670,483 + PP_0572 0.82 +0.4
670,483 + PP_0572 0.82 -2.6
670,483 + PP_0572 0.82 -0.6
670,484 - PP_0572 0.82 +0.1
670,738 + +0.6
670,738 + -0.7
670,738 + -1.8
670,739 - -1.3
670,911 + +1.0
670,911 + +1.3
670,911 + +0.1
670,911 + +0.6
670,911 + -1.1
670,911 + -0.9
670,912 - +0.3
670,941 + +0.5
670,941 + -0.2
670,942 - -2.8
671,005 + +1.1
671,006 - -0.3
671,096 + -1.5
671,096 + +0.4
671,097 - -0.7
671,097 - -0.2
671,139 - PP_0573 0.11 -0.6
671,160 + PP_0573 0.12 +0.1
671,160 + PP_0573 0.12 -1.4
671,161 - PP_0573 0.12 +0.6
671,282 + PP_0573 0.19 -0.4
671,282 + PP_0573 0.19 +1.4
671,282 + PP_0573 0.19 -0.7
671,331 - PP_0573 0.22 +0.2
671,331 - PP_0573 0.22 +0.4
671,331 - PP_0573 0.22 +1.7
671,331 - PP_0573 0.22 +0.0
671,370 - PP_0573 0.25 -0.4
671,381 + PP_0573 0.25 +0.7
671,381 + PP_0573 0.25 +1.2
671,381 + PP_0573 0.25 -1.0
671,381 + PP_0573 0.25 -0.5
671,382 - PP_0573 0.25 -0.1
671,382 - PP_0573 0.25 -0.1
671,382 - PP_0573 0.25 -0.0
671,387 + PP_0573 0.26 -0.6
671,388 - PP_0573 0.26 -0.2
671,388 - PP_0573 0.26 +0.2
671,444 + PP_0573 0.29 +3.0
671,445 - PP_0573 0.29 +0.7
671,445 - PP_0573 0.29 -0.5
671,448 + PP_0573 0.29 +1.4
671,448 + PP_0573 0.29 +1.7
671,448 + PP_0573 0.29 +0.1
671,448 + PP_0573 0.29 -1.7
671,448 + PP_0573 0.29 +0.3
671,448 + PP_0573 0.29 +0.5
671,448 + PP_0573 0.29 +0.8
671,449 - PP_0573 0.29 -0.9
671,457 - PP_0573 0.30 +0.8
671,492 + PP_0573 0.32 +1.4
671,493 - PP_0573 0.32 +1.4
671,493 - PP_0573 0.32 +0.5
671,558 + PP_0573 0.35 -0.4
671,559 - PP_0573 0.36 +0.8
671,559 - PP_0573 0.36 -0.4
671,807 + +1.9
671,807 + PP_0573 0.50 +0.9
671,811 - PP_0573 0.50 -0.6
671,825 + PP_0573 0.51 +1.2
671,826 - PP_0573 0.51 -0.3
671,826 - PP_0573 0.51 +0.5
671,826 - PP_0573 0.51 -0.9
671,835 - PP_0573 0.52 +1.2
671,835 - PP_0573 0.52 +1.3
671,904 + PP_0573 0.56 +1.0
671,904 + PP_0573 0.56 +0.4
671,904 + PP_0573 0.56 +0.8
671,905 - PP_0573 0.56 -0.5
671,955 - PP_0573 0.58 -1.0
672,023 + PP_0573 0.62 +0.9
672,023 + PP_0573 0.62 +1.0
672,080 + PP_0573 0.66 +1.2
672,080 + PP_0573 0.66 +1.7
672,089 + PP_0573 0.66 -0.2
672,089 + PP_0573 0.66 +0.7
672,089 + PP_0573 0.66 +0.8
672,089 + PP_0573 0.66 +2.0
672,089 + PP_0573 0.66 +0.4
672,089 + PP_0573 0.66 +0.2
672,089 + PP_0573 0.66 +1.6
672,089 + PP_0573 0.66 +1.0
672,089 + PP_0573 0.66 +0.6
672,090 - PP_0573 0.66 +0.8
672,090 - PP_0573 0.66 +1.0
672,090 - PP_0573 0.66 +0.0
672,090 - PP_0573 0.66 -1.2
672,090 - PP_0573 0.66 +0.3
672,090 - PP_0573 0.66 +0.5
672,210 - PP_0573 0.73 -1.6
672,210 - PP_0573 0.73 +1.1
672,299 + PP_0573 0.78 +0.8
672,299 + PP_0573 0.78 +0.6
672,299 + PP_0573 0.78 +0.9
672,413 + PP_0573 0.85 +1.0
672,425 + PP_0573 0.86 -0.1
672,426 - PP_0573 0.86 +1.0
672,426 - PP_0573 0.86 -0.8
672,439 + PP_0573 0.87 +0.3
672,440 - PP_0573 0.87 -0.9
672,440 - PP_0573 0.87 +0.5
672,464 + PP_0573 0.88 +1.6
672,464 + PP_0573 0.88 +0.4
672,464 + PP_0573 0.88 +0.7
672,465 - PP_0573 0.88 -0.4
672,496 + PP_0573 0.90 +0.1
672,497 - PP_0573 0.90 +0.3
672,669 - +0.1
672,669 - -0.1
672,679 + -0.2
672,679 + -0.5
672,679 + +0.9
672,679 + +0.6
672,679 + -0.4
672,679 + +0.2
672,680 - +0.1
672,680 - +0.9
672,680 - +1.4
672,728 - -0.4
672,728 - +0.6
672,728 - -2.6
672,820 + -0.7
672,820 + +0.9
672,820 + +1.4
672,820 + +2.1
672,821 - PP_0574 0.10 +0.5
672,821 - PP_0574 0.10 +1.2
672,836 + PP_0574 0.12 -0.5
672,836 + +2.5
672,849 + PP_0574 0.14 -1.8
672,849 + PP_0574 0.14 -0.2
672,849 + PP_0574 0.14 +1.0
672,849 + PP_0574 0.14 +1.1
672,850 - PP_0574 0.14 -0.6
672,850 - PP_0574 0.14 +0.7
672,850 - PP_0574 0.14 -0.0
672,850 - PP_0574 0.14 +0.3
672,850 - PP_0574 0.14 +0.2
672,850 - PP_0574 0.14 +0.4
672,897 + PP_0574 0.20 -0.2
672,898 - PP_0574 0.20 +0.6
672,917 + PP_0574 0.22 +0.9
673,191 + PP_0574 0.58 +0.8
673,191 + PP_0574 0.58 +2.3
673,191 + PP_0574 0.58 +2.5
673,192 - PP_0574 0.58 -0.1
673,192 - PP_0574 0.58 +0.8
673,194 + PP_0574 0.58 +1.4
673,194 + PP_0574 0.58 +0.2
673,195 - PP_0574 0.58 -2.4
673,195 - PP_0574 0.58 +0.1
673,215 - PP_0574 0.61 +1.5
673,215 - PP_0574 0.61 -0.2
673,380 + PP_0574 0.82 -0.6
673,380 + PP_0574 0.82 +0.5
673,380 + PP_0574 0.82 +1.2
673,380 + PP_0574 0.82 +1.5
673,380 + PP_0574 0.82 +0.4
673,380 + PP_0574 0.82 +0.8
673,380 + PP_0574 0.82 +1.2
673,381 - PP_0574 0.82 +0.4
673,381 - PP_0574 0.82 +0.5
673,381 - PP_0574 0.82 -0.8
673,381 - PP_0574 0.82 +0.5
673,425 + PP_0574 0.88 -0.1
673,425 + PP_0574 0.88 -0.1
673,425 + PP_0574 0.88 +0.7
673,425 + PP_0574 0.88 +0.9
673,425 + PP_0574 0.88 +0.6
673,426 - PP_0574 0.88 +0.8
673,426 - PP_0574 0.88 +1.3
673,426 - +1.6
673,426 - PP_0574 0.88 +0.8
673,426 - PP_0574 0.88 -1.7
673,496 + -0.0
673,496 + +0.6
673,497 - +1.0
673,497 - +0.3
673,537 + +0.6
673,538 - +0.3
673,539 + +0.8
673,574 + +1.0
673,574 + +1.1
673,575 - -2.2
673,580 + -1.6
673,581 - -0.2
673,597 + +0.4
673,597 + -0.3
673,597 + -2.1
673,598 - +0.9
673,598 - -0.2
673,598 - -2.1
673,601 + +0.9
673,601 + -0.3
673,601 + +0.3
673,601 + -0.3
673,601 + -0.1
673,601 + +1.5
673,601 + +1.0
673,602 - +1.5
673,602 - -0.0
673,602 - -1.0
673,612 + +1.0
673,612 + +1.1
673,612 + +1.1
673,613 - -0.0
673,613 - -1.0
673,613 - +0.7

Or see this region's nucleotide sequence