Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26620 and PS417_26625 are separated by 164 nucleotides PS417_26625 and PS417_26630 overlap by 38 nucleotides PS417_26630 and PS417_26635 are separated by 61 nucleotides
PS417_26620: PS417_26620 - malonate decarboxylase subunit alpha, at 5,753,148 to 5,754,818
_26620
PS417_26625: PS417_26625 - hypothetical protein, at 5,754,983 to 5,755,417
_26625
PS417_26630: PS417_26630 - transcriptional regulator, at 5,755,380 to 5,756,009
_26630
PS417_26635: PS417_26635 - hypothetical protein, at 5,756,071 to 5,756,310
_26635
Position (kb)
5754
5755
5756 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 5754.010 kb on - strand, within PS417_26620 at 5754.158 kb on - strand, within PS417_26620 at 5754.158 kb on - strand, within PS417_26620 at 5754.333 kb on - strand, within PS417_26620 at 5754.333 kb on - strand, within PS417_26620 at 5754.406 kb on + strand, within PS417_26620 at 5754.407 kb on - strand, within PS417_26620 at 5754.418 kb on + strand, within PS417_26620 at 5754.418 kb on + strand, within PS417_26620 at 5754.418 kb on + strand, within PS417_26620 at 5754.418 kb on + strand, within PS417_26620 at 5754.418 kb on + strand, within PS417_26620 at 5754.418 kb on + strand, within PS417_26620 at 5754.419 kb on - strand, within PS417_26620 at 5754.419 kb on - strand, within PS417_26620 at 5754.419 kb on - strand, within PS417_26620 at 5754.419 kb on - strand, within PS417_26620 at 5754.419 kb on - strand, within PS417_26620 at 5754.419 kb on - strand, within PS417_26620 at 5754.419 kb on - strand, within PS417_26620 at 5754.423 kb on - strand, within PS417_26620 at 5754.657 kb on + strand at 5754.658 kb on - strand at 5754.737 kb on - strand at 5754.850 kb on + strand at 5754.851 kb on - strand at 5754.855 kb on + strand at 5754.855 kb on + strand at 5754.856 kb on - strand at 5754.966 kb on + strand at 5754.967 kb on - strand at 5755.036 kb on + strand, within PS417_26625 at 5755.037 kb on - strand, within PS417_26625 at 5755.083 kb on + strand, within PS417_26625 at 5755.083 kb on + strand, within PS417_26625 at 5755.083 kb on + strand, within PS417_26625 at 5755.084 kb on - strand, within PS417_26625 at 5755.092 kb on + strand, within PS417_26625 at 5755.093 kb on - strand, within PS417_26625 at 5755.162 kb on + strand, within PS417_26625 at 5755.162 kb on + strand, within PS417_26625 at 5755.254 kb on + strand, within PS417_26625 at 5755.254 kb on + strand, within PS417_26625 at 5755.254 kb on + strand, within PS417_26625 at 5755.255 kb on - strand, within PS417_26625 at 5755.255 kb on - strand, within PS417_26625 at 5755.255 kb on - strand, within PS417_26625 at 5755.255 kb on - strand, within PS417_26625 at 5755.283 kb on + strand, within PS417_26625 at 5755.403 kb on + strand at 5755.597 kb on + strand, within PS417_26630 at 5755.597 kb on + strand, within PS417_26630 at 5755.597 kb on + strand, within PS417_26630 at 5755.629 kb on + strand, within PS417_26630 at 5755.629 kb on + strand, within PS417_26630 at 5755.629 kb on + strand, within PS417_26630 at 5755.629 kb on + strand, within PS417_26630 at 5755.713 kb on + strand, within PS417_26630 at 5755.713 kb on + strand, within PS417_26630 at 5755.774 kb on + strand, within PS417_26630 at 5755.801 kb on + strand, within PS417_26630 at 5755.802 kb on - strand, within PS417_26630 at 5756.119 kb on + strand, within PS417_26635 at 5756.119 kb on + strand, within PS417_26635 at 5756.119 kb on + strand, within PS417_26635 at 5756.272 kb on + strand, within PS417_26635 at 5756.322 kb on + strand at 5756.408 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 5,754,010 - PS417_26620 0.52 -0.8 5,754,158 - PS417_26620 0.60 +1.1 5,754,158 - PS417_26620 0.60 -0.1 5,754,333 - PS417_26620 0.71 +0.1 5,754,333 - PS417_26620 0.71 -0.8 5,754,406 + PS417_26620 0.75 +1.8 5,754,407 - PS417_26620 0.75 -0.3 5,754,418 + PS417_26620 0.76 -0.4 5,754,418 + PS417_26620 0.76 +1.6 5,754,418 + PS417_26620 0.76 -0.1 5,754,418 + PS417_26620 0.76 +0.2 5,754,418 + PS417_26620 0.76 -2.4 5,754,418 + PS417_26620 0.76 -0.4 5,754,419 - PS417_26620 0.76 +0.2 5,754,419 - PS417_26620 0.76 -0.1 5,754,419 - PS417_26620 0.76 -0.4 5,754,419 - PS417_26620 0.76 -2.0 5,754,419 - PS417_26620 0.76 -0.0 5,754,419 - PS417_26620 0.76 -0.1 5,754,419 - PS417_26620 0.76 -0.4 5,754,423 - PS417_26620 0.76 -0.3 5,754,657 + -0.5 5,754,658 - +0.2 5,754,737 - +1.0 5,754,850 + -0.4 5,754,851 - -1.9 5,754,855 + -0.3 5,754,855 + -0.4 5,754,856 - +0.8 5,754,966 + +1.3 5,754,967 - +0.7 5,755,036 + PS417_26625 0.12 -0.0 5,755,037 - PS417_26625 0.12 +0.4 5,755,083 + PS417_26625 0.23 -0.2 5,755,083 + PS417_26625 0.23 +0.4 5,755,083 + PS417_26625 0.23 +0.3 5,755,084 - PS417_26625 0.23 +0.6 5,755,092 + PS417_26625 0.25 +1.5 5,755,093 - PS417_26625 0.25 -0.7 5,755,162 + PS417_26625 0.41 +0.3 5,755,162 + PS417_26625 0.41 +0.5 5,755,254 + PS417_26625 0.62 -0.2 5,755,254 + PS417_26625 0.62 -1.6 5,755,254 + PS417_26625 0.62 +0.5 5,755,255 - PS417_26625 0.63 +0.5 5,755,255 - PS417_26625 0.63 -0.1 5,755,255 - PS417_26625 0.63 -0.4 5,755,255 - PS417_26625 0.63 +0.3 5,755,283 + PS417_26625 0.69 -1.5 5,755,403 + +0.2 5,755,597 + PS417_26630 0.34 +0.3 5,755,597 + PS417_26630 0.34 -0.2 5,755,597 + PS417_26630 0.34 -1.6 5,755,629 + PS417_26630 0.40 -0.2 5,755,629 + PS417_26630 0.40 +0.5 5,755,629 + PS417_26630 0.40 -0.1 5,755,629 + PS417_26630 0.40 +4.1 5,755,713 + PS417_26630 0.53 -1.2 5,755,713 + PS417_26630 0.53 -0.8 5,755,774 + PS417_26630 0.63 -0.1 5,755,801 + PS417_26630 0.67 -0.7 5,755,802 - PS417_26630 0.67 +1.3 5,756,119 + PS417_26635 0.20 -1.0 5,756,119 + PS417_26635 0.20 +0.1 5,756,119 + PS417_26635 0.20 +0.1 5,756,272 + PS417_26635 0.84 +0.1 5,756,322 + -0.3 5,756,408 - +0.2
Or see this region's nucleotide sequence