Strain Fitness in Pseudomonas simiae WCS417 around PS417_05775

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_05760 and PS417_05765 are separated by 52 nucleotidesPS417_05765 and PS417_05775 are separated by 127 nucleotidesPS417_05775 and PS417_05780 overlap by 1 nucleotidesPS417_05780 and PS417_05785 overlap by 8 nucleotidesPS417_05785 and PS417_05790 are separated by 9 nucleotides PS417_05760: PS417_05760 - phage tail protein, at 1,288,586 to 1,289,092 _05760 PS417_05765: PS417_05765 - hypothetical protein, at 1,289,145 to 1,289,717 _05765 PS417_05775: PS417_05775 - tail tape measure protein, at 1,289,845 to 1,291,305 _05775 PS417_05780: PS417_05780 - hypothetical protein, at 1,291,305 to 1,291,688 _05780 PS417_05785: PS417_05785 - tail protein, at 1,291,681 to 1,291,893 _05785 PS417_05790: PS417_05790 - hypothetical protein, at 1,291,903 to 1,292,910 _05790 Position (kb) 1289 1290 1291 1292Strain fitness (log2 ratio) -2 -1 0 1at 1288.871 kb on + strand, within PS417_05760at 1288.872 kb on - strand, within PS417_05760at 1288.872 kb on - strand, within PS417_05760at 1288.880 kb on + strand, within PS417_05760at 1288.881 kb on - strand, within PS417_05760at 1288.976 kb on + strand, within PS417_05760at 1288.976 kb on + strand, within PS417_05760at 1288.976 kb on + strand, within PS417_05760at 1288.976 kb on + strand, within PS417_05760at 1289.019 kb on + strand, within PS417_05760at 1289.020 kb on - strand, within PS417_05760at 1289.020 kb on - strand, within PS417_05760at 1289.020 kb on - strand, within PS417_05760at 1289.123 kb on + strandat 1289.124 kb on - strandat 1289.124 kb on - strandat 1289.140 kb on - strandat 1289.235 kb on + strand, within PS417_05765at 1289.235 kb on + strand, within PS417_05765at 1289.235 kb on + strand, within PS417_05765at 1289.238 kb on + strand, within PS417_05765at 1289.239 kb on - strand, within PS417_05765at 1289.361 kb on + strand, within PS417_05765at 1289.362 kb on - strand, within PS417_05765at 1289.379 kb on + strand, within PS417_05765at 1289.380 kb on - strand, within PS417_05765at 1289.380 kb on - strand, within PS417_05765at 1289.383 kb on + strand, within PS417_05765at 1289.383 kb on + strand, within PS417_05765at 1289.383 kb on + strand, within PS417_05765at 1289.384 kb on - strand, within PS417_05765at 1289.384 kb on - strand, within PS417_05765at 1289.837 kb on + strandat 1289.837 kb on + strandat 1289.838 kb on - strandat 1289.857 kb on - strandat 1289.860 kb on + strandat 1290.343 kb on - strand, within PS417_05775at 1290.360 kb on + strand, within PS417_05775at 1290.369 kb on + strand, within PS417_05775at 1290.844 kb on + strand, within PS417_05775at 1290.845 kb on - strand, within PS417_05775at 1291.186 kb on + strandat 1291.334 kb on + strandat 1291.334 kb on + strandat 1291.363 kb on - strand, within PS417_05780at 1291.564 kb on + strand, within PS417_05780at 1291.687 kb on - strandat 1291.687 kb on - strandat 1291.698 kb on + strandat 1291.698 kb on + strandat 1291.698 kb on + strandat 1291.739 kb on + strand, within PS417_05785at 1291.739 kb on + strand, within PS417_05785at 1291.891 kb on + strandat 1291.918 kb on - strandat 1291.937 kb on - strandat 1292.115 kb on + strand, within PS417_05790

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
remove
1,288,871 + PS417_05760 0.56 -0.6
1,288,872 - PS417_05760 0.56 -0.5
1,288,872 - PS417_05760 0.56 -0.5
1,288,880 + PS417_05760 0.58 +1.4
1,288,881 - PS417_05760 0.58 +0.4
1,288,976 + PS417_05760 0.77 +0.4
1,288,976 + PS417_05760 0.77 -1.1
1,288,976 + PS417_05760 0.77 -0.8
1,288,976 + PS417_05760 0.77 -0.3
1,289,019 + PS417_05760 0.85 -0.5
1,289,020 - PS417_05760 0.86 +0.7
1,289,020 - PS417_05760 0.86 -1.6
1,289,020 - PS417_05760 0.86 -0.3
1,289,123 + -0.3
1,289,124 - -0.2
1,289,124 - -0.0
1,289,140 - +0.3
1,289,235 + PS417_05765 0.16 -0.5
1,289,235 + PS417_05765 0.16 -0.3
1,289,235 + PS417_05765 0.16 +0.0
1,289,238 + PS417_05765 0.16 +0.3
1,289,239 - PS417_05765 0.16 +0.6
1,289,361 + PS417_05765 0.38 +0.3
1,289,362 - PS417_05765 0.38 -0.1
1,289,379 + PS417_05765 0.41 +0.0
1,289,380 - PS417_05765 0.41 +0.0
1,289,380 - PS417_05765 0.41 -0.7
1,289,383 + PS417_05765 0.42 +0.7
1,289,383 + PS417_05765 0.42 -0.1
1,289,383 + PS417_05765 0.42 -0.9
1,289,384 - PS417_05765 0.42 -0.0
1,289,384 - PS417_05765 0.42 +0.1
1,289,837 + -0.0
1,289,837 + -0.8
1,289,838 - -0.3
1,289,857 - -0.1
1,289,860 + +0.1
1,290,343 - PS417_05775 0.34 +0.4
1,290,360 + PS417_05775 0.35 -0.6
1,290,369 + PS417_05775 0.36 -0.3
1,290,844 + PS417_05775 0.68 -1.3
1,290,845 - PS417_05775 0.68 -0.6
1,291,186 + -2.3
1,291,334 + -1.0
1,291,334 + -0.8
1,291,363 - PS417_05780 0.15 +0.2
1,291,564 + PS417_05780 0.67 -0.6
1,291,687 - +0.7
1,291,687 - -0.5
1,291,698 + +0.0
1,291,698 + -0.6
1,291,698 + -0.6
1,291,739 + PS417_05785 0.27 -0.6
1,291,739 + PS417_05785 0.27 -0.9
1,291,891 + +0.4
1,291,918 - +0.7
1,291,937 - +0.0
1,292,115 + PS417_05790 0.21 -0.5

Or see this region's nucleotide sequence