Experiment: Growth at 30C; with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4410 and PP_5674 are separated by 70 nucleotides PP_5674 and PP_4411 are separated by 898 nucleotides
PP_4410: PP_4410 - conserved protein of unknown function, at 5,003,649 to 5,006,948
_4410
PP_5674: PP_5674 - conserved protein of unknown function, at 5,007,019 to 5,007,618
_5674
PP_4411: PP_4411 - conserved protein of unknown function, at 5,008,517 to 5,009,065
_4411
Position (kb) 5007
5008 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5006.201 kb on + strand, within PP_4410 at 5006.202 kb on - strand, within PP_4410 at 5006.215 kb on + strand, within PP_4410 at 5006.226 kb on + strand, within PP_4410 at 5006.227 kb on - strand, within PP_4410 at 5006.227 kb on - strand, within PP_4410 at 5006.228 kb on + strand, within PP_4410 at 5006.229 kb on - strand, within PP_4410 at 5006.393 kb on - strand, within PP_4410 at 5006.623 kb on - strand at 5006.771 kb on + strand at 5007.052 kb on - strand at 5007.141 kb on - strand at 5007.386 kb on + strand, within PP_5674 at 5007.386 kb on + strand, within PP_5674 at 5007.518 kb on + strand, within PP_5674 at 5007.536 kb on + strand, within PP_5674 at 5007.536 kb on + strand, within PP_5674 at 5007.589 kb on + strand at 5007.635 kb on - strand at 5007.635 kb on - strand at 5007.711 kb on + strand at 5007.712 kb on - strand at 5007.717 kb on + strand at 5007.718 kb on - strand at 5007.718 kb on - strand at 5007.767 kb on + strand at 5007.767 kb on + strand at 5007.768 kb on - strand at 5007.784 kb on - strand at 5007.784 kb on - strand at 5007.839 kb on + strand at 5007.840 kb on - strand at 5007.880 kb on + strand at 5007.881 kb on - strand at 5007.909 kb on + strand at 5007.909 kb on + strand at 5007.913 kb on + strand at 5007.913 kb on + strand at 5007.913 kb on + strand at 5007.914 kb on - strand at 5007.914 kb on - strand at 5007.914 kb on - strand at 5007.914 kb on - strand at 5007.914 kb on - strand at 5007.914 kb on - strand at 5007.914 kb on - strand at 5007.923 kb on - strand at 5007.948 kb on - strand at 5007.970 kb on + strand at 5007.970 kb on + strand at 5007.971 kb on - strand at 5007.971 kb on - strand at 5008.004 kb on + strand at 5008.004 kb on + strand at 5008.004 kb on + strand at 5008.004 kb on + strand at 5008.004 kb on + strand at 5008.004 kb on + strand at 5008.005 kb on - strand at 5008.005 kb on - strand at 5008.090 kb on + strand at 5008.199 kb on + strand at 5008.200 kb on - strand at 5008.200 kb on - strand at 5008.281 kb on + strand at 5008.442 kb on + strand at 5008.496 kb on + strand at 5008.513 kb on - strand at 5008.580 kb on + strand, within PP_4411 at 5008.589 kb on + strand, within PP_4411 at 5008.589 kb on + strand, within PP_4411 at 5008.590 kb on - strand, within PP_4411 at 5008.590 kb on - strand, within PP_4411 at 5008.590 kb on - strand, within PP_4411 at 5008.590 kb on - strand, within PP_4411
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at 30C; with MOPS remove 5,006,201 + PP_4410 0.77 -0.7 5,006,202 - PP_4410 0.77 -3.2 5,006,215 + PP_4410 0.78 -1.3 5,006,226 + PP_4410 0.78 -3.3 5,006,227 - PP_4410 0.78 -3.0 5,006,227 - PP_4410 0.78 -1.5 5,006,228 + PP_4410 0.78 +1.6 5,006,229 - PP_4410 0.78 -0.7 5,006,393 - PP_4410 0.83 -1.9 5,006,623 - +0.5 5,006,771 + +1.9 5,007,052 - +0.9 5,007,141 - +1.9 5,007,386 + PP_5674 0.61 -1.7 5,007,386 + PP_5674 0.61 +1.3 5,007,518 + PP_5674 0.83 +0.5 5,007,536 + PP_5674 0.86 +1.0 5,007,536 + PP_5674 0.86 +1.2 5,007,589 + -0.5 5,007,635 - -1.4 5,007,635 - -4.3 5,007,711 + -3.7 5,007,712 - +0.1 5,007,717 + +0.3 5,007,718 - -0.9 5,007,718 - +0.7 5,007,767 + +0.7 5,007,767 + -1.6 5,007,768 - +1.2 5,007,784 - -0.7 5,007,784 - -1.2 5,007,839 + -0.6 5,007,840 - +1.0 5,007,880 + +0.3 5,007,881 - -3.6 5,007,909 + -0.0 5,007,909 + -2.8 5,007,913 + +1.8 5,007,913 + -4.0 5,007,913 + +1.0 5,007,914 - -0.4 5,007,914 - -4.4 5,007,914 - -1.8 5,007,914 - -1.3 5,007,914 - +1.5 5,007,914 - +1.2 5,007,914 - +0.1 5,007,923 - -0.0 5,007,948 - +1.3 5,007,970 + -4.4 5,007,970 + -0.5 5,007,971 - +0.1 5,007,971 - +0.1 5,008,004 + -2.7 5,008,004 + +0.2 5,008,004 + +0.7 5,008,004 + +0.4 5,008,004 + -4.1 5,008,004 + +1.0 5,008,005 - +1.6 5,008,005 - +0.8 5,008,090 + -0.1 5,008,199 + +0.5 5,008,200 - +0.8 5,008,200 - -4.1 5,008,281 + +0.5 5,008,442 + -0.0 5,008,496 + +0.0 5,008,513 - +2.7 5,008,580 + PP_4411 0.11 -1.4 5,008,589 + PP_4411 0.13 +1.3 5,008,589 + PP_4411 0.13 +0.1 5,008,590 - PP_4411 0.13 +1.4 5,008,590 - PP_4411 0.13 -0.1 5,008,590 - PP_4411 0.13 +0.4 5,008,590 - PP_4411 0.13 -2.8
Or see this region's nucleotide sequence