Strain Fitness in Pseudomonas putida KT2440 around PP_5600

Experiment: Growth at 30C; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3329 and PP_5600 are separated by 128 nucleotidesPP_5600 and PP_3330 are separated by 38 nucleotides PP_3329: PP_3329 - conserved membrane protein of unknown function, at 3,766,568 to 3,767,857 _3329 PP_5600: PP_5600 - conserved protein of unknown function, at 3,767,986 to 3,768,375 _5600 PP_3330: PP_3330 - putative Outer membrane ferric siderophore receptor, at 3,768,414 to 3,770,600 _3330 Position (kb) 3767 3768 3769Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3767.016 kb on - strand, within PP_3329at 3767.053 kb on - strand, within PP_3329at 3767.207 kb on + strand, within PP_3329at 3767.207 kb on + strand, within PP_3329at 3767.211 kb on + strand, within PP_3329at 3767.211 kb on + strand, within PP_3329at 3767.211 kb on + strand, within PP_3329at 3767.212 kb on - strand, within PP_3329at 3767.212 kb on - strand, within PP_3329at 3767.212 kb on - strand, within PP_3329at 3767.212 kb on - strand, within PP_3329at 3767.212 kb on - strand, within PP_3329at 3767.212 kb on - strand, within PP_3329at 3767.298 kb on + strand, within PP_3329at 3767.298 kb on + strand, within PP_3329at 3767.298 kb on + strand, within PP_3329at 3767.299 kb on - strand, within PP_3329at 3767.299 kb on - strand, within PP_3329at 3767.299 kb on - strand, within PP_3329at 3767.299 kb on - strand, within PP_3329at 3767.299 kb on - strand, within PP_3329at 3767.299 kb on - strand, within PP_3329at 3767.299 kb on - strand, within PP_3329at 3767.308 kb on + strand, within PP_3329at 3767.309 kb on - strand, within PP_3329at 3767.484 kb on + strand, within PP_3329at 3767.485 kb on - strand, within PP_3329at 3767.597 kb on + strand, within PP_3329at 3767.598 kb on - strand, within PP_3329at 3767.598 kb on - strand, within PP_3329at 3767.598 kb on - strand, within PP_3329at 3767.598 kb on - strand, within PP_3329at 3767.598 kb on - strand, within PP_3329at 3767.598 kb on - strand, within PP_3329at 3767.598 kb on - strand, within PP_3329at 3767.797 kb on - strandat 3767.855 kb on + strandat 3767.929 kb on + strandat 3767.929 kb on + strandat 3767.929 kb on + strandat 3767.930 kb on - strandat 3767.930 kb on - strandat 3767.930 kb on - strandat 3768.031 kb on + strand, within PP_5600at 3768.105 kb on + strand, within PP_5600at 3768.287 kb on + strand, within PP_5600at 3768.756 kb on + strand, within PP_3330at 3768.757 kb on - strand, within PP_3330at 3768.858 kb on + strand, within PP_3330at 3768.859 kb on - strand, within PP_3330at 3768.859 kb on - strand, within PP_3330at 3768.996 kb on + strand, within PP_3330at 3768.996 kb on + strand, within PP_3330at 3768.997 kb on - strand, within PP_3330at 3769.077 kb on + strand, within PP_3330at 3769.077 kb on + strand, within PP_3330at 3769.101 kb on + strand, within PP_3330at 3769.102 kb on - strand, within PP_3330at 3769.104 kb on - strand, within PP_3330at 3769.104 kb on - strand, within PP_3330at 3769.194 kb on + strand, within PP_3330at 3769.195 kb on - strand, within PP_3330at 3769.238 kb on - strand, within PP_3330at 3769.256 kb on + strand, within PP_3330at 3769.256 kb on + strand, within PP_3330at 3769.257 kb on - strand, within PP_3330at 3769.294 kb on - strand, within PP_3330at 3769.294 kb on - strand, within PP_3330at 3769.294 kb on - strand, within PP_3330at 3769.314 kb on + strand, within PP_3330at 3769.353 kb on + strand, within PP_3330

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 30C; with MOPS
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3,767,016 - PP_3329 0.35 +0.8
3,767,053 - PP_3329 0.38 +0.0
3,767,207 + PP_3329 0.50 -0.6
3,767,207 + PP_3329 0.50 +1.3
3,767,211 + PP_3329 0.50 +0.5
3,767,211 + PP_3329 0.50 -2.1
3,767,211 + PP_3329 0.50 -0.4
3,767,212 - PP_3329 0.50 -2.9
3,767,212 - PP_3329 0.50 +0.5
3,767,212 - PP_3329 0.50 -2.3
3,767,212 - PP_3329 0.50 -0.8
3,767,212 - PP_3329 0.50 +1.0
3,767,212 - PP_3329 0.50 -0.9
3,767,298 + PP_3329 0.57 +2.2
3,767,298 + PP_3329 0.57 -1.0
3,767,298 + PP_3329 0.57 -3.8
3,767,299 - PP_3329 0.57 -1.6
3,767,299 - PP_3329 0.57 +1.2
3,767,299 - PP_3329 0.57 -4.2
3,767,299 - PP_3329 0.57 -0.9
3,767,299 - PP_3329 0.57 +1.0
3,767,299 - PP_3329 0.57 -1.8
3,767,299 - PP_3329 0.57 -1.3
3,767,308 + PP_3329 0.57 -2.9
3,767,309 - PP_3329 0.57 -0.6
3,767,484 + PP_3329 0.71 -2.0
3,767,485 - PP_3329 0.71 +1.4
3,767,597 + PP_3329 0.80 -0.5
3,767,598 - PP_3329 0.80 +1.0
3,767,598 - PP_3329 0.80 +1.1
3,767,598 - PP_3329 0.80 -0.4
3,767,598 - PP_3329 0.80 -0.3
3,767,598 - PP_3329 0.80 +1.1
3,767,598 - PP_3329 0.80 -0.0
3,767,598 - PP_3329 0.80 -0.0
3,767,797 - +0.3
3,767,855 + -0.4
3,767,929 + -0.1
3,767,929 + -3.8
3,767,929 + -1.1
3,767,930 - -1.9
3,767,930 - -0.6
3,767,930 - -0.1
3,768,031 + PP_5600 0.12 +1.3
3,768,105 + PP_5600 0.31 +0.5
3,768,287 + PP_5600 0.77 +0.8
3,768,756 + PP_3330 0.16 -0.3
3,768,757 - PP_3330 0.16 -0.3
3,768,858 + PP_3330 0.20 -2.5
3,768,859 - PP_3330 0.20 -0.5
3,768,859 - PP_3330 0.20 +2.1
3,768,996 + PP_3330 0.27 +2.3
3,768,996 + PP_3330 0.27 +0.4
3,768,997 - PP_3330 0.27 +0.3
3,769,077 + PP_3330 0.30 -0.6
3,769,077 + PP_3330 0.30 +1.2
3,769,101 + PP_3330 0.31 +1.5
3,769,102 - PP_3330 0.31 +0.2
3,769,104 - PP_3330 0.32 -4.3
3,769,104 - PP_3330 0.32 +0.2
3,769,194 + PP_3330 0.36 -0.7
3,769,195 - PP_3330 0.36 +2.1
3,769,238 - PP_3330 0.38 -1.3
3,769,256 + PP_3330 0.39 -1.3
3,769,256 + PP_3330 0.39 +0.2
3,769,257 - PP_3330 0.39 -0.4
3,769,294 - PP_3330 0.40 -2.2
3,769,294 - PP_3330 0.40 +0.7
3,769,294 - PP_3330 0.40 -0.4
3,769,314 + PP_3330 0.41 -0.5
3,769,353 + PP_3330 0.43 +0.7

Or see this region's nucleotide sequence