Strain Fitness in Pseudomonas putida KT2440 around PP_5252

Experiment: Growth at 30C; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5251 and PP_5252 are separated by 176 nucleotidesPP_5252 and PP_5253 are separated by 199 nucleotides PP_5251: PP_5251 - putative Transporter, at 5,993,274 to 5,994,872 _5251 PP_5252: PP_5252 - conserved exported protein of unknown function, at 5,995,049 to 5,997,031 _5252 PP_5253: PP_5253 - Arylesterase, at 5,997,231 to 5,998,049 _5253 Position (kb) 5995 5996 5997 5998Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5994.080 kb on + strand, within PP_5251at 5994.152 kb on - strand, within PP_5251at 5994.168 kb on + strand, within PP_5251at 5994.168 kb on + strand, within PP_5251at 5994.169 kb on - strand, within PP_5251at 5994.169 kb on - strand, within PP_5251at 5994.169 kb on - strand, within PP_5251at 5994.169 kb on - strand, within PP_5251at 5994.169 kb on - strand, within PP_5251at 5994.209 kb on - strand, within PP_5251at 5994.211 kb on - strand, within PP_5251at 5994.211 kb on - strand, within PP_5251at 5994.329 kb on - strand, within PP_5251at 5994.330 kb on + strand, within PP_5251at 5994.330 kb on + strand, within PP_5251at 5994.330 kb on + strand, within PP_5251at 5994.330 kb on + strand, within PP_5251at 5994.330 kb on + strand, within PP_5251at 5994.330 kb on + strand, within PP_5251at 5994.331 kb on - strand, within PP_5251at 5994.331 kb on - strand, within PP_5251at 5994.331 kb on - strand, within PP_5251at 5994.331 kb on - strand, within PP_5251at 5994.331 kb on - strand, within PP_5251at 5994.446 kb on + strand, within PP_5251at 5994.579 kb on + strand, within PP_5251at 5994.580 kb on - strand, within PP_5251at 5994.838 kb on + strandat 5994.838 kb on + strandat 5994.838 kb on + strandat 5994.838 kb on + strandat 5994.838 kb on + strandat 5994.839 kb on - strandat 5994.857 kb on + strandat 5994.857 kb on + strandat 5994.857 kb on + strandat 5994.857 kb on + strandat 5994.858 kb on - strandat 5994.858 kb on - strandat 5995.018 kb on + strandat 5995.019 kb on - strandat 5995.050 kb on + strandat 5995.050 kb on + strandat 5995.051 kb on - strandat 5995.051 kb on - strandat 5995.296 kb on + strand, within PP_5252at 5995.296 kb on + strand, within PP_5252at 5995.297 kb on - strand, within PP_5252at 5995.297 kb on - strand, within PP_5252at 5995.545 kb on + strand, within PP_5252at 5995.546 kb on - strand, within PP_5252at 5995.566 kb on + strand, within PP_5252at 5995.566 kb on + strand, within PP_5252at 5995.566 kb on + strand, within PP_5252at 5995.567 kb on - strand, within PP_5252at 5995.567 kb on - strand, within PP_5252at 5995.680 kb on + strand, within PP_5252at 5995.681 kb on - strand, within PP_5252at 5995.681 kb on - strand, within PP_5252at 5995.681 kb on - strand, within PP_5252at 5995.718 kb on - strand, within PP_5252at 5995.718 kb on - strand, within PP_5252at 5995.860 kb on + strand, within PP_5252at 5995.860 kb on + strand, within PP_5252at 5995.860 kb on + strand, within PP_5252at 5995.861 kb on - strand, within PP_5252at 5995.861 kb on - strand, within PP_5252at 5995.861 kb on - strand, within PP_5252at 5996.113 kb on - strand, within PP_5252at 5996.113 kb on - strand, within PP_5252at 5996.167 kb on - strand, within PP_5252at 5996.268 kb on + strand, within PP_5252at 5996.269 kb on - strand, within PP_5252at 5996.284 kb on + strand, within PP_5252at 5996.284 kb on + strand, within PP_5252at 5996.285 kb on - strand, within PP_5252at 5996.308 kb on - strand, within PP_5252at 5996.538 kb on + strand, within PP_5252at 5996.538 kb on + strand, within PP_5252at 5996.539 kb on - strand, within PP_5252at 5996.579 kb on - strand, within PP_5252at 5996.661 kb on + strand, within PP_5252at 5996.661 kb on + strand, within PP_5252at 5996.662 kb on - strand, within PP_5252at 5997.187 kb on - strandat 5997.198 kb on - strandat 5997.233 kb on - strandat 5997.310 kb on + strandat 5997.310 kb on + strandat 5997.311 kb on - strandat 5997.311 kb on - strandat 5997.311 kb on - strandat 5997.311 kb on - strandat 5997.311 kb on - strandat 5997.738 kb on - strand, within PP_5253at 5997.739 kb on + strand, within PP_5253at 5997.740 kb on - strand, within PP_5253at 5997.842 kb on - strand, within PP_5253at 5997.842 kb on - strand, within PP_5253at 5998.012 kb on + strandat 5998.012 kb on + strandat 5998.012 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 30C; with MOPS
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5,994,080 + PP_5251 0.50 -0.5
5,994,152 - PP_5251 0.55 -0.2
5,994,168 + PP_5251 0.56 +1.2
5,994,168 + PP_5251 0.56 +0.5
5,994,169 - PP_5251 0.56 -0.6
5,994,169 - PP_5251 0.56 +0.1
5,994,169 - PP_5251 0.56 +0.9
5,994,169 - PP_5251 0.56 -4.2
5,994,169 - PP_5251 0.56 +0.1
5,994,209 - PP_5251 0.58 -3.2
5,994,211 - PP_5251 0.59 -4.1
5,994,211 - PP_5251 0.59 +0.2
5,994,329 - PP_5251 0.66 +0.2
5,994,330 + PP_5251 0.66 -1.1
5,994,330 + PP_5251 0.66 +1.8
5,994,330 + PP_5251 0.66 -2.5
5,994,330 + PP_5251 0.66 -0.6
5,994,330 + PP_5251 0.66 -0.8
5,994,330 + PP_5251 0.66 -0.5
5,994,331 - PP_5251 0.66 +0.2
5,994,331 - PP_5251 0.66 -0.5
5,994,331 - PP_5251 0.66 +1.4
5,994,331 - PP_5251 0.66 +3.5
5,994,331 - PP_5251 0.66 -1.7
5,994,446 + PP_5251 0.73 +1.6
5,994,579 + PP_5251 0.82 -3.0
5,994,580 - PP_5251 0.82 -1.2
5,994,838 + +1.2
5,994,838 + +0.2
5,994,838 + +0.3
5,994,838 + +0.1
5,994,838 + -1.1
5,994,839 - -0.9
5,994,857 + -1.0
5,994,857 + -0.2
5,994,857 + +0.3
5,994,857 + -3.2
5,994,858 - +0.3
5,994,858 - -1.6
5,995,018 + +0.4
5,995,019 - +0.9
5,995,050 + +0.1
5,995,050 + -0.9
5,995,051 - -0.6
5,995,051 - -4.6
5,995,296 + PP_5252 0.12 -1.1
5,995,296 + PP_5252 0.12 +0.7
5,995,297 - PP_5252 0.13 -3.3
5,995,297 - PP_5252 0.13 -0.5
5,995,545 + PP_5252 0.25 -0.5
5,995,546 - PP_5252 0.25 +0.3
5,995,566 + PP_5252 0.26 -0.3
5,995,566 + PP_5252 0.26 +1.3
5,995,566 + PP_5252 0.26 -0.4
5,995,567 - PP_5252 0.26 -0.1
5,995,567 - PP_5252 0.26 +0.4
5,995,680 + PP_5252 0.32 -0.9
5,995,681 - PP_5252 0.32 +0.2
5,995,681 - PP_5252 0.32 -3.6
5,995,681 - PP_5252 0.32 -3.2
5,995,718 - PP_5252 0.34 -2.7
5,995,718 - PP_5252 0.34 -3.4
5,995,860 + PP_5252 0.41 -0.8
5,995,860 + PP_5252 0.41 -2.8
5,995,860 + PP_5252 0.41 +0.3
5,995,861 - PP_5252 0.41 -0.2
5,995,861 - PP_5252 0.41 -0.5
5,995,861 - PP_5252 0.41 +0.5
5,996,113 - PP_5252 0.54 +0.2
5,996,113 - PP_5252 0.54 +0.5
5,996,167 - PP_5252 0.56 -3.5
5,996,268 + PP_5252 0.61 +0.0
5,996,269 - PP_5252 0.62 -4.4
5,996,284 + PP_5252 0.62 +2.1
5,996,284 + PP_5252 0.62 -3.7
5,996,285 - PP_5252 0.62 +0.6
5,996,308 - PP_5252 0.63 +0.1
5,996,538 + PP_5252 0.75 +0.4
5,996,538 + PP_5252 0.75 -1.1
5,996,539 - PP_5252 0.75 -0.8
5,996,579 - PP_5252 0.77 -1.2
5,996,661 + PP_5252 0.81 -0.2
5,996,661 + PP_5252 0.81 -2.6
5,996,662 - PP_5252 0.81 +0.8
5,997,187 - +0.6
5,997,198 - -0.4
5,997,233 - +0.4
5,997,310 + +1.9
5,997,310 + +0.8
5,997,311 - +0.2
5,997,311 - -0.1
5,997,311 - -3.9
5,997,311 - -0.7
5,997,311 - -1.5
5,997,738 - PP_5253 0.62 +0.1
5,997,739 + PP_5253 0.62 -0.6
5,997,740 - PP_5253 0.62 +1.2
5,997,842 - PP_5253 0.75 +1.5
5,997,842 - PP_5253 0.75 +0.8
5,998,012 + -3.4
5,998,012 + +1.3
5,998,012 + -3.8

Or see this region's nucleotide sequence