Experiment: Growth at 30C; with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5239 and PP_5240 are separated by 68 nucleotides PP_5240 and PP_5241 overlap by 4 nucleotides PP_5241 and PP_5242 are separated by 239 nucleotides
PP_5239: PP_5239 - putative ATP-dependent chelatase, at 5,976,200 to 5,977,690
_5239
PP_5240: PP_5240 - Response regulator, at 5,977,759 to 5,978,127
_5240
PP_5241: PP_5241 - DNA-binding response regulator, LuxR family, at 5,978,124 to 5,979,116
_5241
PP_5242: PP_5242 - Sensor histidine kinase/GAF domain protein, at 5,979,356 to 5,984,404
_5242
Position (kb) 5978
5979
5980 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5977.375 kb on + strand, within PP_5239 at 5977.375 kb on + strand, within PP_5239 at 5977.375 kb on + strand, within PP_5239 at 5977.376 kb on - strand, within PP_5239 at 5977.376 kb on - strand, within PP_5239 at 5977.376 kb on - strand, within PP_5239 at 5977.376 kb on - strand, within PP_5239 at 5977.376 kb on - strand, within PP_5239 at 5977.376 kb on - strand, within PP_5239 at 5977.498 kb on - strand, within PP_5239 at 5977.498 kb on - strand, within PP_5239 at 5977.688 kb on + strand at 5977.689 kb on - strand at 5977.689 kb on - strand at 5977.689 kb on - strand at 5977.755 kb on + strand at 5977.755 kb on + strand at 5977.755 kb on + strand at 5977.755 kb on + strand at 5977.755 kb on + strand at 5977.755 kb on + strand at 5977.756 kb on - strand at 5977.756 kb on - strand at 5977.756 kb on - strand at 5977.890 kb on + strand, within PP_5240 at 5977.890 kb on + strand, within PP_5240 at 5977.891 kb on - strand, within PP_5240 at 5977.891 kb on - strand, within PP_5240 at 5977.891 kb on - strand, within PP_5240 at 5977.936 kb on + strand, within PP_5240 at 5978.339 kb on - strand, within PP_5241 at 5978.559 kb on + strand, within PP_5241 at 5978.559 kb on + strand, within PP_5241 at 5979.188 kb on + strand at 5979.188 kb on + strand at 5979.200 kb on + strand at 5979.200 kb on + strand at 5979.201 kb on - strand at 5979.219 kb on + strand at 5979.219 kb on + strand at 5979.219 kb on + strand at 5979.219 kb on + strand at 5979.220 kb on - strand at 5979.220 kb on - strand at 5979.220 kb on - strand at 5979.317 kb on + strand at 5979.319 kb on + strand at 5979.355 kb on + strand at 5979.355 kb on + strand at 5979.356 kb on - strand at 5979.356 kb on - strand at 5979.356 kb on - strand at 5979.393 kb on - strand at 5979.467 kb on + strand at 5979.468 kb on - strand at 5979.642 kb on - strand at 5979.770 kb on - strand at 5979.791 kb on + strand at 5979.791 kb on + strand at 5979.791 kb on + strand at 5979.792 kb on - strand at 5979.887 kb on + strand, within PP_5242 at 5979.919 kb on + strand, within PP_5242 at 5979.947 kb on + strand, within PP_5242 at 5979.947 kb on + strand, within PP_5242 at 5979.947 kb on + strand, within PP_5242 at 5979.947 kb on + strand, within PP_5242 at 5979.947 kb on + strand, within PP_5242 at 5979.948 kb on - strand, within PP_5242 at 5979.948 kb on - strand, within PP_5242 at 5979.948 kb on - strand, within PP_5242 at 5979.948 kb on - strand, within PP_5242 at 5979.968 kb on + strand, within PP_5242 at 5979.969 kb on - strand, within PP_5242 at 5979.975 kb on + strand, within PP_5242 at 5979.975 kb on + strand, within PP_5242 at 5979.975 kb on + strand, within PP_5242 at 5979.976 kb on - strand, within PP_5242 at 5979.981 kb on + strand, within PP_5242
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at 30C; with MOPS remove 5,977,375 + PP_5239 0.79 +0.4 5,977,375 + PP_5239 0.79 -0.3 5,977,375 + PP_5239 0.79 +0.2 5,977,376 - PP_5239 0.79 -1.6 5,977,376 - PP_5239 0.79 +1.7 5,977,376 - PP_5239 0.79 -0.1 5,977,376 - PP_5239 0.79 -3.3 5,977,376 - PP_5239 0.79 -0.7 5,977,376 - PP_5239 0.79 -3.6 5,977,498 - PP_5239 0.87 +0.1 5,977,498 - PP_5239 0.87 -3.8 5,977,688 + -0.3 5,977,689 - +0.1 5,977,689 - -0.3 5,977,689 - +0.3 5,977,755 + +1.1 5,977,755 + -3.1 5,977,755 + +0.3 5,977,755 + +1.4 5,977,755 + -3.6 5,977,755 + +1.1 5,977,756 - +0.6 5,977,756 - -1.1 5,977,756 - +0.6 5,977,890 + PP_5240 0.36 -0.3 5,977,890 + PP_5240 0.36 +1.1 5,977,891 - PP_5240 0.36 -2.7 5,977,891 - PP_5240 0.36 -0.1 5,977,891 - PP_5240 0.36 +1.6 5,977,936 + PP_5240 0.48 +3.2 5,978,339 - PP_5241 0.22 +1.5 5,978,559 + PP_5241 0.44 -2.2 5,978,559 + PP_5241 0.44 +1.7 5,979,188 + +0.6 5,979,188 + +1.7 5,979,200 + -4.0 5,979,200 + +0.0 5,979,201 - -2.6 5,979,219 + +1.7 5,979,219 + -0.1 5,979,219 + +2.8 5,979,219 + -0.3 5,979,220 - -1.0 5,979,220 - +0.6 5,979,220 - -0.8 5,979,317 + +0.3 5,979,319 + +0.9 5,979,355 + -2.8 5,979,355 + -3.8 5,979,356 - -2.9 5,979,356 - -3.0 5,979,356 - +1.1 5,979,393 - +0.2 5,979,467 + +2.2 5,979,468 - +0.8 5,979,642 - +1.3 5,979,770 - -3.5 5,979,791 + -3.0 5,979,791 + -4.3 5,979,791 + -4.1 5,979,792 - -1.5 5,979,887 + PP_5242 0.11 +0.5 5,979,919 + PP_5242 0.11 -0.4 5,979,947 + PP_5242 0.12 +1.8 5,979,947 + PP_5242 0.12 -0.3 5,979,947 + PP_5242 0.12 +0.7 5,979,947 + PP_5242 0.12 -3.0 5,979,947 + PP_5242 0.12 -3.5 5,979,948 - PP_5242 0.12 -2.8 5,979,948 - PP_5242 0.12 +0.1 5,979,948 - PP_5242 0.12 -0.2 5,979,948 - PP_5242 0.12 +2.2 5,979,968 + PP_5242 0.12 -1.3 5,979,969 - PP_5242 0.12 -3.1 5,979,975 + PP_5242 0.12 +1.4 5,979,975 + PP_5242 0.12 +0.1 5,979,975 + PP_5242 0.12 -1.5 5,979,976 - PP_5242 0.12 +0.7 5,979,981 + PP_5242 0.12 -2.0
Or see this region's nucleotide sequence