Strain Fitness in Pseudomonas putida KT2440 around PP_5083

Experiment: Growth at 30C; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5081 and PP_5082 overlap by 4 nucleotidesPP_5082 and PP_5083 overlap by 4 nucleotidesPP_5083 and PP_5084 are separated by 203 nucleotides PP_5081: PP_5081 - Type IV pili biogenesis protein, at 5,802,781 to 5,803,797 _5081 PP_5082: PP_5082 - Type IV pili biogenesis protein PilN, at 5,803,794 to 5,804,330 _5082 PP_5083: PP_5083 - putative Type IV pili biogenesis protein PilM, at 5,804,327 to 5,805,208 _5083 PP_5084: PP_5084 - penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase, at 5,805,412 to 5,807,865 _5084 Position (kb) 5804 5805 5806Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5803.399 kb on + strand, within PP_5081at 5803.435 kb on + strand, within PP_5081at 5803.435 kb on + strand, within PP_5081at 5803.436 kb on - strand, within PP_5081at 5803.436 kb on - strand, within PP_5081at 5803.526 kb on + strand, within PP_5081at 5803.526 kb on + strand, within PP_5081at 5803.567 kb on + strand, within PP_5081at 5803.568 kb on - strand, within PP_5081at 5803.568 kb on - strand, within PP_5081at 5803.666 kb on + strand, within PP_5081at 5803.666 kb on + strand, within PP_5081at 5803.667 kb on - strand, within PP_5081at 5803.968 kb on - strand, within PP_5082at 5804.040 kb on + strand, within PP_5082at 5804.040 kb on + strand, within PP_5082at 5804.088 kb on + strand, within PP_5082at 5804.089 kb on - strand, within PP_5082at 5804.142 kb on + strand, within PP_5082at 5804.142 kb on + strand, within PP_5082at 5804.142 kb on + strand, within PP_5082at 5804.142 kb on + strand, within PP_5082at 5804.143 kb on - strand, within PP_5082at 5804.143 kb on - strand, within PP_5082at 5804.143 kb on - strand, within PP_5082at 5804.143 kb on - strand, within PP_5082at 5804.144 kb on + strand, within PP_5082at 5804.144 kb on + strand, within PP_5082at 5804.144 kb on + strand, within PP_5082at 5804.144 kb on + strand, within PP_5082at 5804.145 kb on - strand, within PP_5082at 5804.145 kb on - strand, within PP_5082at 5804.145 kb on - strand, within PP_5082at 5804.145 kb on - strand, within PP_5082at 5804.412 kb on + strandat 5804.413 kb on - strandat 5804.450 kb on + strand, within PP_5083at 5804.519 kb on + strand, within PP_5083at 5804.790 kb on - strand, within PP_5083at 5804.950 kb on + strand, within PP_5083at 5805.158 kb on - strandat 5805.230 kb on + strandat 5805.230 kb on + strandat 5805.341 kb on + strandat 5805.341 kb on + strandat 5805.342 kb on - strandat 5805.343 kb on + strandat 5805.343 kb on + strandat 5805.343 kb on + strandat 5805.343 kb on + strandat 5805.343 kb on + strandat 5805.343 kb on + strandat 5805.344 kb on - strandat 5805.344 kb on - strandat 5805.344 kb on - strandat 5805.416 kb on + strandat 5805.417 kb on - strandat 5805.417 kb on - strandat 5805.417 kb on - strandat 5805.417 kb on - strandat 5805.417 kb on - strandat 5805.471 kb on - strandat 5805.496 kb on + strandat 5805.497 kb on - strandat 5805.497 kb on - strandat 5805.501 kb on + strandat 5805.566 kb on - strandat 5805.566 kb on - strandat 5805.753 kb on + strand, within PP_5084at 5805.935 kb on - strand, within PP_5084at 5805.935 kb on - strand, within PP_5084at 5805.961 kb on + strand, within PP_5084at 5805.961 kb on + strand, within PP_5084at 5805.961 kb on + strand, within PP_5084at 5805.961 kb on + strand, within PP_5084at 5805.962 kb on - strand, within PP_5084at 5806.102 kb on + strand, within PP_5084at 5806.102 kb on + strand, within PP_5084at 5806.102 kb on + strand, within PP_5084at 5806.102 kb on + strand, within PP_5084at 5806.102 kb on + strand, within PP_5084at 5806.103 kb on - strand, within PP_5084at 5806.103 kb on - strand, within PP_5084at 5806.103 kb on - strand, within PP_5084at 5806.103 kb on - strand, within PP_5084at 5806.103 kb on - strand, within PP_5084at 5806.133 kb on - strand, within PP_5084at 5806.168 kb on + strand, within PP_5084at 5806.168 kb on + strand, within PP_5084at 5806.169 kb on - strand, within PP_5084at 5806.169 kb on - strand, within PP_5084at 5806.201 kb on + strandat 5806.201 kb on + strand, within PP_5084

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 30C; with MOPS
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5,803,399 + PP_5081 0.61 -0.3
5,803,435 + PP_5081 0.64 -2.5
5,803,435 + PP_5081 0.64 +0.0
5,803,436 - PP_5081 0.64 +1.6
5,803,436 - PP_5081 0.64 +1.3
5,803,526 + PP_5081 0.73 +0.3
5,803,526 + PP_5081 0.73 +1.9
5,803,567 + PP_5081 0.77 +1.0
5,803,568 - PP_5081 0.77 +1.8
5,803,568 - PP_5081 0.77 +1.8
5,803,666 + PP_5081 0.87 -0.1
5,803,666 + PP_5081 0.87 -1.0
5,803,667 - PP_5081 0.87 -3.8
5,803,968 - PP_5082 0.32 +0.4
5,804,040 + PP_5082 0.46 +0.8
5,804,040 + PP_5082 0.46 +1.2
5,804,088 + PP_5082 0.55 +0.4
5,804,089 - PP_5082 0.55 +0.4
5,804,142 + PP_5082 0.65 +0.3
5,804,142 + PP_5082 0.65 -3.6
5,804,142 + PP_5082 0.65 +0.6
5,804,142 + PP_5082 0.65 +0.9
5,804,143 - PP_5082 0.65 +0.4
5,804,143 - PP_5082 0.65 -4.2
5,804,143 - PP_5082 0.65 +1.7
5,804,143 - PP_5082 0.65 -0.1
5,804,144 + PP_5082 0.65 +0.6
5,804,144 + PP_5082 0.65 -0.6
5,804,144 + PP_5082 0.65 +1.2
5,804,144 + PP_5082 0.65 +0.7
5,804,145 - PP_5082 0.65 -1.6
5,804,145 - PP_5082 0.65 -2.5
5,804,145 - PP_5082 0.65 +0.5
5,804,145 - PP_5082 0.65 +0.2
5,804,412 + -3.4
5,804,413 - -1.0
5,804,450 + PP_5083 0.14 +2.0
5,804,519 + PP_5083 0.22 -0.3
5,804,790 - PP_5083 0.52 +1.4
5,804,950 + PP_5083 0.71 -4.4
5,805,158 - -0.0
5,805,230 + -1.6
5,805,230 + -0.3
5,805,341 + +2.3
5,805,341 + +0.3
5,805,342 - -2.8
5,805,343 + -0.3
5,805,343 + -3.9
5,805,343 + +0.8
5,805,343 + +1.5
5,805,343 + +0.9
5,805,343 + +1.1
5,805,344 - -2.1
5,805,344 - -1.8
5,805,344 - -3.0
5,805,416 + -2.1
5,805,417 - +2.8
5,805,417 - -0.9
5,805,417 - +1.9
5,805,417 - +0.2
5,805,417 - +1.8
5,805,471 - +1.8
5,805,496 + +1.2
5,805,497 - +0.7
5,805,497 - +0.7
5,805,501 + -3.6
5,805,566 - +0.1
5,805,566 - -0.4
5,805,753 + PP_5084 0.14 -1.6
5,805,935 - PP_5084 0.21 +0.6
5,805,935 - PP_5084 0.21 +2.2
5,805,961 + PP_5084 0.22 +2.2
5,805,961 + PP_5084 0.22 -1.6
5,805,961 + PP_5084 0.22 +2.3
5,805,961 + PP_5084 0.22 +2.8
5,805,962 - PP_5084 0.22 +1.6
5,806,102 + PP_5084 0.28 -0.1
5,806,102 + PP_5084 0.28 -0.6
5,806,102 + PP_5084 0.28 -1.5
5,806,102 + PP_5084 0.28 -3.5
5,806,102 + PP_5084 0.28 +1.0
5,806,103 - PP_5084 0.28 -3.3
5,806,103 - PP_5084 0.28 -0.1
5,806,103 - PP_5084 0.28 +0.2
5,806,103 - PP_5084 0.28 +1.7
5,806,103 - PP_5084 0.28 -2.4
5,806,133 - PP_5084 0.29 -1.6
5,806,168 + PP_5084 0.31 +1.0
5,806,168 + PP_5084 0.31 +3.0
5,806,169 - PP_5084 0.31 +2.0
5,806,169 - PP_5084 0.31 -2.2
5,806,201 + -1.2
5,806,201 + PP_5084 0.32 +1.7

Or see this region's nucleotide sequence