Strain Fitness in Pseudomonas putida KT2440 around PP_4879

Experiment: Growth at 30C; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4877 and PP_4879 are separated by 876 nucleotidesPP_4879 and PP_4880 overlap by 4 nucleotides PP_4877: PP_4877 - 30S ribosomal protein S6, at 5,544,435 to 5,544,860 _4877 PP_4879: PP_4879 - 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB, at 5,545,737 to 5,546,483 _4879 PP_4880: PP_4880 - exoribonuclease R, at 5,546,480 to 5,549,053 _4880 Position (kb) 5545 5546 5547Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5545.044 kb on - strandat 5545.047 kb on + strandat 5545.047 kb on + strandat 5545.047 kb on + strandat 5545.048 kb on - strandat 5545.048 kb on - strandat 5545.048 kb on - strandat 5545.048 kb on - strandat 5545.671 kb on + strandat 5545.695 kb on - strandat 5545.802 kb on + strandat 5545.930 kb on + strand, within PP_4879at 5545.930 kb on + strand, within PP_4879at 5545.930 kb on + strand, within PP_4879at 5545.931 kb on - strand, within PP_4879at 5545.931 kb on - strand, within PP_4879at 5545.931 kb on - strand, within PP_4879at 5545.931 kb on - strand, within PP_4879at 5546.000 kb on + strand, within PP_4879at 5546.268 kb on + strand, within PP_4879at 5546.455 kb on - strandat 5546.461 kb on + strandat 5546.530 kb on + strandat 5546.530 kb on + strandat 5546.531 kb on - strandat 5546.676 kb on + strandat 5546.676 kb on + strandat 5546.676 kb on + strandat 5546.676 kb on + strandat 5546.930 kb on + strand, within PP_4880at 5546.931 kb on - strand, within PP_4880at 5546.946 kb on + strand, within PP_4880at 5546.946 kb on + strand, within PP_4880at 5546.946 kb on + strand, within PP_4880at 5546.947 kb on - strand, within PP_4880at 5546.949 kb on + strand, within PP_4880at 5546.949 kb on + strand, within PP_4880at 5546.949 kb on + strand, within PP_4880at 5546.950 kb on - strandat 5546.950 kb on - strand, within PP_4880at 5546.950 kb on - strand, within PP_4880at 5546.950 kb on - strand, within PP_4880at 5546.950 kb on - strand, within PP_4880at 5546.950 kb on - strand, within PP_4880at 5546.987 kb on + strand, within PP_4880at 5546.987 kb on + strand, within PP_4880at 5546.987 kb on + strand, within PP_4880at 5546.987 kb on + strand, within PP_4880at 5546.987 kb on + strand, within PP_4880at 5546.988 kb on - strand, within PP_4880at 5546.988 kb on - strand, within PP_4880at 5546.988 kb on - strand, within PP_4880at 5546.991 kb on + strand, within PP_4880at 5546.991 kb on + strand, within PP_4880at 5546.991 kb on + strand, within PP_4880at 5546.991 kb on + strand, within PP_4880at 5546.991 kb on + strand, within PP_4880at 5546.991 kb on + strand, within PP_4880at 5546.991 kb on + strand, within PP_4880at 5546.991 kb on + strand, within PP_4880at 5546.991 kb on + strand, within PP_4880at 5546.991 kb on + strand, within PP_4880at 5546.992 kb on - strand, within PP_4880at 5546.992 kb on - strand, within PP_4880at 5546.992 kb on - strand, within PP_4880at 5546.992 kb on - strand, within PP_4880at 5546.992 kb on - strand, within PP_4880at 5546.992 kb on - strand, within PP_4880at 5546.992 kb on - strand, within PP_4880at 5546.992 kb on - strand, within PP_4880at 5546.992 kb on - strand, within PP_4880at 5546.992 kb on - strand, within PP_4880at 5546.992 kb on - strand, within PP_4880at 5546.992 kb on - strand, within PP_4880at 5546.996 kb on - strand, within PP_4880at 5547.186 kb on + strand, within PP_4880at 5547.186 kb on + strand, within PP_4880at 5547.186 kb on + strand, within PP_4880at 5547.187 kb on - strand, within PP_4880at 5547.190 kb on + strand, within PP_4880at 5547.191 kb on - strand, within PP_4880at 5547.191 kb on - strand, within PP_4880at 5547.324 kb on + strand, within PP_4880at 5547.324 kb on + strand, within PP_4880at 5547.324 kb on + strand, within PP_4880at 5547.325 kb on - strand, within PP_4880at 5547.325 kb on - strand, within PP_4880at 5547.325 kb on - strand, within PP_4880at 5547.325 kb on - strand, within PP_4880at 5547.325 kb on - strand, within PP_4880at 5547.333 kb on + strand, within PP_4880at 5547.370 kb on - strand, within PP_4880at 5547.456 kb on + strand, within PP_4880

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 30C; with MOPS
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5,545,044 - +1.2
5,545,047 + -0.1
5,545,047 + -0.1
5,545,047 + -0.6
5,545,048 - -3.2
5,545,048 - +0.9
5,545,048 - +2.3
5,545,048 - +0.5
5,545,671 + +1.1
5,545,695 - +1.0
5,545,802 + +1.1
5,545,930 + PP_4879 0.26 +0.9
5,545,930 + PP_4879 0.26 +1.6
5,545,930 + PP_4879 0.26 -1.5
5,545,931 - PP_4879 0.26 +1.0
5,545,931 - PP_4879 0.26 -0.6
5,545,931 - PP_4879 0.26 +1.1
5,545,931 - PP_4879 0.26 -3.5
5,546,000 + PP_4879 0.35 +1.5
5,546,268 + PP_4879 0.71 +2.4
5,546,455 - -0.1
5,546,461 + +1.3
5,546,530 + -0.9
5,546,530 + -0.8
5,546,531 - +2.4
5,546,676 + -2.2
5,546,676 + -3.0
5,546,676 + -3.0
5,546,676 + +0.5
5,546,930 + PP_4880 0.17 -0.6
5,546,931 - PP_4880 0.18 -1.8
5,546,946 + PP_4880 0.18 -0.6
5,546,946 + PP_4880 0.18 -1.7
5,546,946 + PP_4880 0.18 -0.8
5,546,947 - PP_4880 0.18 -2.0
5,546,949 + PP_4880 0.18 -1.6
5,546,949 + PP_4880 0.18 +0.2
5,546,949 + PP_4880 0.18 -1.0
5,546,950 - +1.2
5,546,950 - PP_4880 0.18 +1.1
5,546,950 - PP_4880 0.18 -3.9
5,546,950 - PP_4880 0.18 +1.3
5,546,950 - PP_4880 0.18 -1.3
5,546,950 - PP_4880 0.18 -0.4
5,546,987 + PP_4880 0.20 -1.0
5,546,987 + PP_4880 0.20 +0.2
5,546,987 + PP_4880 0.20 -0.4
5,546,987 + PP_4880 0.20 +0.2
5,546,987 + PP_4880 0.20 -1.1
5,546,988 - PP_4880 0.20 +1.9
5,546,988 - PP_4880 0.20 -1.4
5,546,988 - PP_4880 0.20 -0.8
5,546,991 + PP_4880 0.20 -2.4
5,546,991 + PP_4880 0.20 -0.6
5,546,991 + PP_4880 0.20 +0.6
5,546,991 + PP_4880 0.20 -1.1
5,546,991 + PP_4880 0.20 +0.6
5,546,991 + PP_4880 0.20 +2.9
5,546,991 + PP_4880 0.20 -0.6
5,546,991 + PP_4880 0.20 -2.4
5,546,991 + PP_4880 0.20 -0.1
5,546,991 + PP_4880 0.20 -2.1
5,546,992 - PP_4880 0.20 -1.4
5,546,992 - PP_4880 0.20 +1.4
5,546,992 - PP_4880 0.20 +2.8
5,546,992 - PP_4880 0.20 -0.1
5,546,992 - PP_4880 0.20 -1.3
5,546,992 - PP_4880 0.20 -1.7
5,546,992 - PP_4880 0.20 -1.6
5,546,992 - PP_4880 0.20 +1.8
5,546,992 - PP_4880 0.20 -1.4
5,546,992 - PP_4880 0.20 -2.2
5,546,992 - PP_4880 0.20 -2.3
5,546,992 - PP_4880 0.20 +1.2
5,546,996 - PP_4880 0.20 -0.4
5,547,186 + PP_4880 0.27 +2.6
5,547,186 + PP_4880 0.27 +0.6
5,547,186 + PP_4880 0.27 -0.4
5,547,187 - PP_4880 0.27 -1.5
5,547,190 + PP_4880 0.28 -0.8
5,547,191 - PP_4880 0.28 +2.2
5,547,191 - PP_4880 0.28 -0.4
5,547,324 + PP_4880 0.33 +0.2
5,547,324 + PP_4880 0.33 -1.5
5,547,324 + PP_4880 0.33 -0.6
5,547,325 - PP_4880 0.33 -1.9
5,547,325 - PP_4880 0.33 +0.2
5,547,325 - PP_4880 0.33 -0.4
5,547,325 - PP_4880 0.33 +0.7
5,547,325 - PP_4880 0.33 +0.2
5,547,333 + PP_4880 0.33 -2.3
5,547,370 - PP_4880 0.35 -1.6
5,547,456 + PP_4880 0.38 +0.2

Or see this region's nucleotide sequence