Experiment: Growth at 30C; with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3988 and PP_3989 are separated by 11 nucleotides PP_3989 and PP_t60 are separated by 254 nucleotides PP_t60 and PP_3990 are separated by 133 nucleotides
PP_3988: PP_3988 - conserved protein of unknown function, at 4,497,955 to 4,500,003
_3988
PP_3989: PP_3989 - DNA-cytosine methyltransferase, at 4,500,015 to 4,501,061
_3989
PP_t60: PP_t60 - tRNA-Ser, at 4,501,316 to 4,501,403
_t60
PP_3990: PP_3990 - substrate or modulator of FtsH-mediated proteolysis, at 4,501,537 to 4,502,208
_3990
Position (kb) 4500
4501
4502 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4499.015 kb on + strand, within PP_3988 at 4499.015 kb on + strand, within PP_3988 at 4499.037 kb on + strand, within PP_3988 at 4499.121 kb on + strand, within PP_3988 at 4499.121 kb on + strand, within PP_3988 at 4499.128 kb on - strand, within PP_3988 at 4499.213 kb on - strand, within PP_3988 at 4499.674 kb on + strand, within PP_3988 at 4499.721 kb on + strand, within PP_3988 at 4499.908 kb on + strand at 4500.005 kb on + strand at 4500.119 kb on + strand at 4500.173 kb on + strand, within PP_3989 at 4500.302 kb on + strand, within PP_3989 at 4500.679 kb on + strand, within PP_3989 at 4500.725 kb on + strand at 4500.762 kb on + strand, within PP_3989 at 4500.814 kb on + strand, within PP_3989 at 4500.814 kb on + strand, within PP_3989 at 4500.814 kb on + strand, within PP_3989 at 4500.837 kb on + strand, within PP_3989 at 4500.837 kb on + strand, within PP_3989 at 4500.883 kb on + strand, within PP_3989 at 4501.097 kb on - strand at 4501.102 kb on - strand at 4501.269 kb on - strand at 4501.492 kb on - strand at 4501.492 kb on - strand at 4501.492 kb on - strand at 4501.520 kb on + strand at 4501.520 kb on + strand at 4501.521 kb on - strand at 4501.552 kb on + strand at 4501.553 kb on - strand at 4501.615 kb on + strand, within PP_3990 at 4501.615 kb on + strand, within PP_3990 at 4501.616 kb on - strand, within PP_3990 at 4501.616 kb on - strand, within PP_3990 at 4501.632 kb on + strand, within PP_3990 at 4501.710 kb on - strand, within PP_3990 at 4501.720 kb on + strand, within PP_3990 at 4501.720 kb on + strand, within PP_3990 at 4501.721 kb on - strand, within PP_3990 at 4501.738 kb on - strand, within PP_3990 at 4501.859 kb on + strand, within PP_3990 at 4501.860 kb on - strand, within PP_3990 at 4501.912 kb on + strand, within PP_3990 at 4501.912 kb on + strand, within PP_3990 at 4501.912 kb on + strand, within PP_3990 at 4501.913 kb on - strand, within PP_3990 at 4501.913 kb on - strand, within PP_3990 at 4501.913 kb on - strand, within PP_3990 at 4502.035 kb on - strand, within PP_3990
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at 30C; with MOPS remove 4,499,015 + PP_3988 0.52 -0.2 4,499,015 + PP_3988 0.52 -3.7 4,499,037 + PP_3988 0.53 -1.7 4,499,121 + PP_3988 0.57 -2.3 4,499,121 + PP_3988 0.57 -0.1 4,499,128 - PP_3988 0.57 +1.3 4,499,213 - PP_3988 0.61 +0.6 4,499,674 + PP_3988 0.84 -0.6 4,499,721 + PP_3988 0.86 -0.2 4,499,908 + +1.4 4,500,005 + +0.4 4,500,119 + -3.9 4,500,173 + PP_3989 0.15 +1.4 4,500,302 + PP_3989 0.27 -1.7 4,500,679 + PP_3989 0.63 +1.6 4,500,725 + +0.7 4,500,762 + PP_3989 0.71 +2.4 4,500,814 + PP_3989 0.76 -1.3 4,500,814 + PP_3989 0.76 -0.8 4,500,814 + PP_3989 0.76 +0.5 4,500,837 + PP_3989 0.79 +0.5 4,500,837 + PP_3989 0.79 +0.3 4,500,883 + PP_3989 0.83 -0.8 4,501,097 - +0.1 4,501,102 - +2.2 4,501,269 - +1.7 4,501,492 - +0.3 4,501,492 - +1.5 4,501,492 - -4.0 4,501,520 + +1.7 4,501,520 + +1.3 4,501,521 - +0.6 4,501,552 + +0.9 4,501,553 - -3.0 4,501,615 + PP_3990 0.12 +1.3 4,501,615 + PP_3990 0.12 +1.2 4,501,616 - PP_3990 0.12 -0.4 4,501,616 - PP_3990 0.12 +1.2 4,501,632 + PP_3990 0.14 -0.5 4,501,710 - PP_3990 0.26 +0.9 4,501,720 + PP_3990 0.27 +0.7 4,501,720 + PP_3990 0.27 +0.5 4,501,721 - PP_3990 0.27 -1.8 4,501,738 - PP_3990 0.30 +0.9 4,501,859 + PP_3990 0.48 +1.9 4,501,860 - PP_3990 0.48 +1.7 4,501,912 + PP_3990 0.56 +2.6 4,501,912 + PP_3990 0.56 +1.2 4,501,912 + PP_3990 0.56 -3.6 4,501,913 - PP_3990 0.56 +0.0 4,501,913 - PP_3990 0.56 +1.5 4,501,913 - PP_3990 0.56 +0.6 4,502,035 - PP_3990 0.74 -0.0
Or see this region's nucleotide sequence