Experiment: Growth at 30C; with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3852 and PP_5638 are separated by 74 nucleotides PP_5638 and PP_3854 overlap by 4 nucleotides PP_3854 and PP_5639 are separated by 88 nucleotides PP_5639 and PP_3855 overlap by 56 nucleotides
PP_3852: PP_3852 - conserved protein of unknown function with BNR domain, at 4,376,084 to 4,377,571
_3852
PP_5638: PP_5638 - conserved protein of unknown function, at 4,377,646 to 4,378,176
_5638
PP_3854: PP_3854 - Lysozyme, at 4,378,173 to 4,378,712
_3854
PP_5639: PP_5639 - conserved exported protein of unknown function, at 4,378,801 to 4,379,169
_5639
PP_3855: PP_3855 - conserved protein of unknown function, at 4,379,114 to 4,379,338
_3855
Position (kb) 4378
4379 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 4377.220 kb on + strand, within PP_3852 at 4377.232 kb on + strand, within PP_3852 at 4377.232 kb on + strand, within PP_3852 at 4377.253 kb on + strand, within PP_3852 at 4377.291 kb on + strand, within PP_3852 at 4377.291 kb on + strand, within PP_3852 at 4377.291 kb on + strand, within PP_3852 at 4377.291 kb on + strand, within PP_3852 at 4377.292 kb on - strand, within PP_3852 at 4377.292 kb on - strand, within PP_3852 at 4377.297 kb on - strand, within PP_3852 at 4377.297 kb on - strand, within PP_3852 at 4377.297 kb on - strand, within PP_3852 at 4377.339 kb on + strand, within PP_3852 at 4377.339 kb on + strand, within PP_3852 at 4377.339 kb on + strand, within PP_3852 at 4377.339 kb on + strand, within PP_3852 at 4377.345 kb on + strand, within PP_3852 at 4377.346 kb on - strand, within PP_3852 at 4377.376 kb on + strand, within PP_3852 at 4377.430 kb on - strand at 4377.502 kb on + strand at 4377.503 kb on - strand at 4377.503 kb on - strand at 4377.566 kb on + strand at 4377.566 kb on + strand at 4377.566 kb on + strand at 4377.566 kb on + strand at 4377.566 kb on + strand at 4377.567 kb on - strand at 4377.567 kb on - strand at 4377.585 kb on - strand at 4377.626 kb on + strand at 4377.626 kb on + strand at 4377.627 kb on - strand at 4377.627 kb on - strand at 4377.627 kb on - strand at 4377.641 kb on + strand at 4377.641 kb on + strand at 4377.641 kb on + strand at 4377.641 kb on + strand at 4377.642 kb on - strand at 4377.642 kb on - strand at 4377.642 kb on - strand at 4377.642 kb on - strand at 4377.642 kb on - strand at 4377.647 kb on + strand at 4377.647 kb on + strand at 4377.647 kb on + strand at 4377.647 kb on + strand at 4377.693 kb on + strand at 4377.693 kb on + strand at 4377.693 kb on + strand at 4377.693 kb on + strand at 4377.693 kb on + strand at 4377.694 kb on - strand at 4377.694 kb on - strand at 4377.694 kb on - strand at 4377.694 kb on - strand at 4377.695 kb on + strand at 4377.695 kb on + strand at 4377.695 kb on + strand at 4377.695 kb on + strand at 4377.695 kb on + strand at 4377.696 kb on - strand at 4377.696 kb on - strand at 4377.701 kb on + strand, within PP_5638 at 4377.701 kb on + strand, within PP_5638 at 4377.701 kb on + strand, within PP_5638 at 4377.701 kb on + strand, within PP_5638 at 4377.701 kb on + strand, within PP_5638 at 4377.702 kb on - strand, within PP_5638 at 4378.033 kb on + strand, within PP_5638 at 4378.034 kb on - strand, within PP_5638 at 4378.115 kb on + strand, within PP_5638 at 4378.258 kb on + strand, within PP_3854 at 4378.258 kb on + strand, within PP_3854 at 4378.258 kb on + strand, within PP_3854 at 4378.259 kb on - strand, within PP_3854 at 4378.456 kb on + strand, within PP_3854 at 4378.456 kb on + strand, within PP_3854 at 4378.456 kb on + strand, within PP_3854 at 4378.456 kb on + strand, within PP_3854 at 4378.457 kb on - strand, within PP_3854 at 4378.457 kb on - strand, within PP_3854 at 4378.519 kb on + strand, within PP_3854 at 4378.519 kb on - strand, within PP_3854 at 4378.520 kb on - strand, within PP_3854 at 4378.528 kb on + strand, within PP_3854 at 4378.567 kb on + strand, within PP_3854 at 4378.568 kb on - strand, within PP_3854 at 4378.609 kb on + strand, within PP_3854 at 4378.610 kb on - strand, within PP_3854 at 4378.610 kb on - strand, within PP_3854 at 4378.659 kb on + strand at 4378.660 kb on - strand at 4378.704 kb on - strand at 4378.704 kb on - strand at 4378.757 kb on + strand at 4378.757 kb on + strand at 4378.764 kb on + strand at 4378.769 kb on + strand at 4378.811 kb on + strand at 4378.811 kb on + strand at 4378.811 kb on + strand at 4378.812 kb on - strand at 4378.812 kb on - strand at 4378.812 kb on - strand at 4378.812 kb on - strand at 4378.812 kb on - strand at 4378.841 kb on + strand, within PP_5639 at 4378.915 kb on + strand, within PP_5639 at 4378.939 kb on + strand, within PP_5639 at 4378.939 kb on + strand, within PP_5639 at 4378.940 kb on - strand, within PP_5639 at 4378.940 kb on - strand, within PP_5639 at 4378.940 kb on - strand, within PP_5639 at 4378.940 kb on - strand, within PP_5639 at 4378.940 kb on - strand, within PP_5639 at 4378.941 kb on + strand, within PP_5639 at 4378.955 kb on - strand, within PP_5639 at 4378.971 kb on - strand, within PP_5639 at 4378.971 kb on - strand, within PP_5639 at 4378.971 kb on - strand, within PP_5639 at 4378.995 kb on - strand, within PP_5639 at 4378.995 kb on - strand, within PP_5639 at 4379.008 kb on + strand, within PP_5639 at 4379.074 kb on + strand, within PP_5639 at 4379.075 kb on - strand, within PP_5639 at 4379.075 kb on - strand, within PP_5639 at 4379.083 kb on + strand, within PP_5639 at 4379.083 kb on + strand, within PP_5639 at 4379.084 kb on - strand, within PP_5639 at 4379.084 kb on - strand, within PP_5639 at 4379.084 kb on - strand, within PP_5639 at 4379.084 kb on - strand, within PP_5639 at 4379.084 kb on - strand, within PP_5639 at 4379.084 kb on - strand, within PP_5639 at 4379.090 kb on + strand, within PP_5639 at 4379.090 kb on + strand, within PP_5639 at 4379.091 kb on - strand, within PP_5639 at 4379.105 kb on + strand, within PP_5639 at 4379.179 kb on + strand, within PP_3855 at 4379.187 kb on + strand, within PP_3855 at 4379.187 kb on + strand, within PP_3855 at 4379.198 kb on + strand, within PP_3855 at 4379.198 kb on + strand, within PP_3855 at 4379.199 kb on - strand, within PP_3855 at 4379.213 kb on + strand, within PP_3855 at 4379.213 kb on + strand, within PP_3855 at 4379.213 kb on + strand, within PP_3855 at 4379.214 kb on - strand, within PP_3855 at 4379.214 kb on - strand, within PP_3855 at 4379.257 kb on + strand, within PP_3855 at 4379.305 kb on - strand, within PP_3855 at 4379.354 kb on + strand at 4379.421 kb on + strand at 4379.442 kb on - strand at 4379.468 kb on - strand at 4379.483 kb on - strand at 4379.508 kb on - strand at 4379.542 kb on + strand at 4379.542 kb on + strand at 4379.542 kb on + strand at 4379.543 kb on - strand at 4379.543 kb on - strand at 4379.543 kb on - strand at 4379.572 kb on + strand at 4379.572 kb on + strand at 4379.572 kb on + strand at 4379.573 kb on - strand at 4379.573 kb on - strand at 4379.574 kb on - strand at 4379.580 kb on + strand at 4379.580 kb on + strand at 4379.580 kb on + strand at 4379.580 kb on + strand at 4379.580 kb on + strand at 4379.581 kb on - strand at 4379.581 kb on - strand at 4379.582 kb on + strand at 4379.583 kb on - strand at 4379.631 kb on + strand at 4379.631 kb on + strand at 4379.632 kb on - strand at 4379.632 kb on - strand at 4379.695 kb on - strand at 4379.695 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at 30C; with MOPS remove 4,377,220 + PP_3852 0.76 -1.3 4,377,232 + PP_3852 0.77 -0.1 4,377,232 + PP_3852 0.77 -0.5 4,377,253 + PP_3852 0.79 -1.7 4,377,291 + PP_3852 0.81 +0.9 4,377,291 + PP_3852 0.81 +0.5 4,377,291 + PP_3852 0.81 +1.1 4,377,291 + PP_3852 0.81 +1.2 4,377,292 - PP_3852 0.81 +1.2 4,377,292 - PP_3852 0.81 -4.4 4,377,297 - PP_3852 0.82 -0.5 4,377,297 - PP_3852 0.82 -2.5 4,377,297 - PP_3852 0.82 +1.6 4,377,339 + PP_3852 0.84 +0.7 4,377,339 + PP_3852 0.84 -0.9 4,377,339 + PP_3852 0.84 -3.8 4,377,339 + PP_3852 0.84 -0.6 4,377,345 + PP_3852 0.85 -3.8 4,377,346 - PP_3852 0.85 -3.6 4,377,376 + PP_3852 0.87 -0.6 4,377,430 - -3.2 4,377,502 + -0.6 4,377,503 - -3.0 4,377,503 - -3.7 4,377,566 + -3.1 4,377,566 + -2.3 4,377,566 + -0.0 4,377,566 + -3.4 4,377,566 + +0.2 4,377,567 - +1.0 4,377,567 - +1.3 4,377,585 - -0.3 4,377,626 + -0.1 4,377,626 + +1.1 4,377,627 - -0.5 4,377,627 - +2.1 4,377,627 - -3.9 4,377,641 + -0.4 4,377,641 + +1.7 4,377,641 + +0.2 4,377,641 + -3.1 4,377,642 - -0.9 4,377,642 - +1.4 4,377,642 - -2.1 4,377,642 - +0.3 4,377,642 - +0.1 4,377,647 + -0.2 4,377,647 + -0.5 4,377,647 + +0.4 4,377,647 + +1.8 4,377,693 + -2.7 4,377,693 + +0.4 4,377,693 + -3.7 4,377,693 + -2.5 4,377,693 + +1.2 4,377,694 - -0.8 4,377,694 - +0.7 4,377,694 - -3.3 4,377,694 - +0.4 4,377,695 + +0.8 4,377,695 + +0.3 4,377,695 + -3.1 4,377,695 + -0.2 4,377,695 + +0.7 4,377,696 - +0.5 4,377,696 - +0.3 4,377,701 + PP_5638 0.10 +0.4 4,377,701 + PP_5638 0.10 +1.4 4,377,701 + PP_5638 0.10 +1.5 4,377,701 + PP_5638 0.10 +0.4 4,377,701 + PP_5638 0.10 +0.8 4,377,702 - PP_5638 0.11 -0.7 4,378,033 + PP_5638 0.73 +0.8 4,378,034 - PP_5638 0.73 -0.6 4,378,115 + PP_5638 0.88 -4.0 4,378,258 + PP_3854 0.16 -1.3 4,378,258 + PP_3854 0.16 +1.1 4,378,258 + PP_3854 0.16 +0.9 4,378,259 - PP_3854 0.16 +1.0 4,378,456 + PP_3854 0.52 -1.9 4,378,456 + PP_3854 0.52 -3.1 4,378,456 + PP_3854 0.52 +1.3 4,378,456 + PP_3854 0.52 +1.8 4,378,457 - PP_3854 0.53 +1.5 4,378,457 - PP_3854 0.53 +0.0 4,378,519 + PP_3854 0.64 -4.1 4,378,519 - PP_3854 0.64 -1.3 4,378,520 - PP_3854 0.64 +1.3 4,378,528 + PP_3854 0.66 +1.5 4,378,567 + PP_3854 0.73 +1.8 4,378,568 - PP_3854 0.73 +1.6 4,378,609 + PP_3854 0.81 -0.7 4,378,610 - PP_3854 0.81 +0.2 4,378,610 - PP_3854 0.81 +1.1 4,378,659 + +1.9 4,378,660 - +0.1 4,378,704 - -0.6 4,378,704 - +1.3 4,378,757 + -0.5 4,378,757 + +0.2 4,378,764 + +0.2 4,378,769 + -3.6 4,378,811 + +1.2 4,378,811 + +0.2 4,378,811 + -4.6 4,378,812 - -2.0 4,378,812 - -4.9 4,378,812 - -0.0 4,378,812 - -1.7 4,378,812 - -5.9 4,378,841 + PP_5639 0.11 +0.3 4,378,915 + PP_5639 0.31 +0.6 4,378,939 + PP_5639 0.37 +1.2 4,378,939 + PP_5639 0.37 +2.6 4,378,940 - PP_5639 0.38 -2.0 4,378,940 - PP_5639 0.38 -1.3 4,378,940 - PP_5639 0.38 -3.8 4,378,940 - PP_5639 0.38 -6.2 4,378,940 - PP_5639 0.38 -1.2 4,378,941 + PP_5639 0.38 +1.0 4,378,955 - PP_5639 0.42 -0.4 4,378,971 - PP_5639 0.46 -0.7 4,378,971 - PP_5639 0.46 -4.3 4,378,971 - PP_5639 0.46 -2.4 4,378,995 - PP_5639 0.53 -2.4 4,378,995 - PP_5639 0.53 -2.4 4,379,008 + PP_5639 0.56 -0.8 4,379,074 + PP_5639 0.74 +1.0 4,379,075 - PP_5639 0.74 -4.4 4,379,075 - PP_5639 0.74 -2.8 4,379,083 + PP_5639 0.76 -4.4 4,379,083 + PP_5639 0.76 -3.0 4,379,084 - PP_5639 0.77 -1.1 4,379,084 - PP_5639 0.77 -4.5 4,379,084 - PP_5639 0.77 -1.1 4,379,084 - PP_5639 0.77 -1.3 4,379,084 - PP_5639 0.77 +0.3 4,379,084 - PP_5639 0.77 -1.5 4,379,090 + PP_5639 0.78 -3.6 4,379,090 + PP_5639 0.78 +0.5 4,379,091 - PP_5639 0.79 +0.1 4,379,105 + PP_5639 0.82 -4.5 4,379,179 + PP_3855 0.29 +1.3 4,379,187 + PP_3855 0.32 -3.1 4,379,187 + PP_3855 0.32 +0.5 4,379,198 + PP_3855 0.37 +1.2 4,379,198 + PP_3855 0.37 +0.8 4,379,199 - PP_3855 0.38 -0.7 4,379,213 + PP_3855 0.44 -2.8 4,379,213 + PP_3855 0.44 +1.4 4,379,213 + PP_3855 0.44 +0.6 4,379,214 - PP_3855 0.44 -4.6 4,379,214 - PP_3855 0.44 -1.7 4,379,257 + PP_3855 0.64 +1.1 4,379,305 - PP_3855 0.85 -0.4 4,379,354 + +0.2 4,379,421 + -0.3 4,379,442 - -5.9 4,379,468 - -1.0 4,379,483 - -4.8 4,379,508 - -1.2 4,379,542 + -3.9 4,379,542 + -1.5 4,379,542 + -1.9 4,379,543 - -5.1 4,379,543 - -0.8 4,379,543 - -4.5 4,379,572 + +0.9 4,379,572 + +1.7 4,379,572 + +0.2 4,379,573 - -0.4 4,379,573 - -0.4 4,379,574 - -0.7 4,379,580 + +1.1 4,379,580 + -0.7 4,379,580 + +0.6 4,379,580 + -0.5 4,379,580 + +0.7 4,379,581 - -2.1 4,379,581 - -1.4 4,379,582 + -4.0 4,379,583 - -2.9 4,379,631 + +0.3 4,379,631 + -0.1 4,379,632 - -0.2 4,379,632 - -0.9 4,379,695 - -1.5 4,379,695 - -3.3
Or see this region's nucleotide sequence