Experiment: Growth at 30C; with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3762 and PP_3763 are separated by 69 nucleotides PP_3763 and PP_3764 are separated by 67 nucleotides PP_3764 and PP_3765 are separated by 349 nucleotides PP_3765 and PP_3766 are separated by 224 nucleotides
PP_3762: PP_3762 - Response regulator, at 4,292,834 to 4,293,184
_3762
PP_3763: PP_3763 - putative CobF protein, at 4,293,254 to 4,294,003
_3763
PP_3764: PP_3764 - outer-membrane porin D, at 4,294,071 to 4,295,372
_3764
PP_3765: PP_3765 - H-NS family protein MvaT, at 4,295,722 to 4,296,081
_3765
PP_3766: PP_3766 - Lactoylglutathione lyase, at 4,296,306 to 4,296,833
_3766
Position (kb) 4294
4295
4296 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4293.166 kb on + strand at 4293.166 kb on + strand at 4293.167 kb on - strand at 4293.210 kb on - strand at 4293.276 kb on + strand at 4293.276 kb on + strand at 4293.276 kb on + strand at 4293.276 kb on + strand at 4293.277 kb on - strand at 4293.277 kb on - strand at 4293.277 kb on - strand at 4293.277 kb on - strand at 4293.277 kb on - strand at 4293.277 kb on - strand at 4293.277 kb on - strand at 4293.280 kb on + strand at 4293.280 kb on + strand at 4293.281 kb on - strand at 4293.281 kb on - strand at 4293.299 kb on - strand at 4293.391 kb on - strand, within PP_3763 at 4293.402 kb on + strand, within PP_3763 at 4293.403 kb on - strand, within PP_3763 at 4293.403 kb on - strand, within PP_3763 at 4293.403 kb on - strand, within PP_3763 at 4293.403 kb on - strand, within PP_3763 at 4293.636 kb on - strand, within PP_3763 at 4293.636 kb on - strand, within PP_3763 at 4293.729 kb on + strand, within PP_3763 at 4293.774 kb on + strand, within PP_3763 at 4293.774 kb on + strand, within PP_3763 at 4293.825 kb on + strand, within PP_3763 at 4293.948 kb on + strand at 4293.948 kb on + strand at 4293.948 kb on + strand at 4293.948 kb on + strand at 4293.949 kb on - strand at 4293.949 kb on - strand at 4293.949 kb on - strand at 4294.052 kb on + strand at 4294.053 kb on - strand at 4294.053 kb on - strand at 4294.072 kb on + strand at 4294.073 kb on - strand at 4294.073 kb on - strand at 4294.073 kb on - strand at 4294.073 kb on - strand at 4294.073 kb on - strand at 4294.090 kb on + strand at 4294.090 kb on + strand at 4294.090 kb on + strand at 4294.091 kb on - strand at 4294.091 kb on - strand at 4294.138 kb on + strand at 4294.138 kb on + strand at 4294.138 kb on + strand at 4294.138 kb on + strand at 4294.139 kb on - strand at 4294.139 kb on - strand at 4294.139 kb on - strand at 4294.151 kb on - strand at 4294.161 kb on - strand at 4294.161 kb on - strand at 4294.170 kb on + strand at 4294.171 kb on - strand at 4294.171 kb on - strand at 4294.171 kb on - strand at 4294.208 kb on - strand, within PP_3764 at 4294.268 kb on + strand, within PP_3764 at 4294.268 kb on + strand, within PP_3764 at 4294.268 kb on + strand, within PP_3764 at 4294.283 kb on + strand, within PP_3764 at 4294.283 kb on + strand, within PP_3764 at 4294.284 kb on - strand, within PP_3764 at 4294.284 kb on - strand, within PP_3764 at 4294.284 kb on - strand, within PP_3764 at 4294.285 kb on + strand, within PP_3764 at 4294.333 kb on + strand, within PP_3764 at 4294.334 kb on - strand, within PP_3764 at 4294.334 kb on - strand, within PP_3764 at 4294.334 kb on - strand, within PP_3764 at 4294.334 kb on - strand, within PP_3764 at 4294.339 kb on + strand, within PP_3764 at 4294.340 kb on - strand, within PP_3764 at 4294.340 kb on - strand, within PP_3764 at 4294.393 kb on + strand, within PP_3764 at 4294.393 kb on + strand, within PP_3764 at 4294.393 kb on + strand, within PP_3764 at 4294.394 kb on - strand, within PP_3764 at 4294.406 kb on - strand, within PP_3764 at 4294.427 kb on - strand, within PP_3764 at 4294.447 kb on + strand, within PP_3764 at 4294.447 kb on + strand, within PP_3764 at 4294.447 kb on + strand, within PP_3764 at 4294.448 kb on - strand, within PP_3764 at 4294.492 kb on + strand, within PP_3764 at 4294.643 kb on + strand, within PP_3764 at 4294.643 kb on + strand, within PP_3764 at 4294.644 kb on - strand, within PP_3764 at 4294.644 kb on - strand, within PP_3764 at 4294.667 kb on - strand, within PP_3764 at 4294.696 kb on + strand, within PP_3764 at 4294.697 kb on - strand, within PP_3764 at 4294.745 kb on - strand, within PP_3764 at 4294.804 kb on + strand, within PP_3764 at 4294.804 kb on + strand, within PP_3764 at 4294.805 kb on - strand, within PP_3764 at 4294.903 kb on + strand, within PP_3764 at 4294.903 kb on + strand, within PP_3764 at 4294.904 kb on - strand, within PP_3764 at 4294.940 kb on - strand, within PP_3764 at 4294.940 kb on - strand, within PP_3764 at 4294.994 kb on - strand, within PP_3764 at 4295.126 kb on + strand, within PP_3764 at 4295.126 kb on + strand, within PP_3764 at 4295.126 kb on + strand, within PP_3764 at 4295.126 kb on + strand at 4295.126 kb on + strand, within PP_3764 at 4295.127 kb on - strand, within PP_3764 at 4295.128 kb on + strand, within PP_3764 at 4295.203 kb on + strand, within PP_3764 at 4295.204 kb on - strand, within PP_3764 at 4295.307 kb on + strand at 4295.308 kb on - strand at 4295.308 kb on - strand at 4295.308 kb on - strand at 4295.308 kb on - strand at 4295.390 kb on + strand at 4295.390 kb on + strand at 4295.391 kb on - strand at 4295.391 kb on - strand at 4295.502 kb on + strand at 4295.541 kb on - strand at 4295.573 kb on - strand at 4295.616 kb on - strand at 4295.706 kb on + strand at 4295.718 kb on + strand at 4295.719 kb on - strand at 4295.719 kb on - strand at 4295.719 kb on - strand at 4295.719 kb on - strand at 4295.719 kb on - strand at 4295.719 kb on - strand at 4295.719 kb on - strand at 4295.719 kb on - strand at 4295.840 kb on + strand, within PP_3765 at 4295.840 kb on + strand, within PP_3765 at 4295.860 kb on + strand, within PP_3765 at 4295.881 kb on - strand, within PP_3765 at 4295.968 kb on + strand, within PP_3765 at 4295.969 kb on - strand, within PP_3765 at 4295.969 kb on - strand, within PP_3765 at 4296.046 kb on + strand at 4296.047 kb on - strand at 4296.047 kb on - strand at 4296.047 kb on - strand at 4296.062 kb on + strand at 4296.095 kb on + strand at 4296.095 kb on + strand at 4296.095 kb on + strand at 4296.096 kb on - strand at 4296.096 kb on - strand at 4296.096 kb on - strand at 4296.131 kb on - strand at 4296.151 kb on - strand at 4296.244 kb on + strand at 4296.244 kb on + strand at 4296.245 kb on - strand at 4296.245 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at 30C; with MOPS remove 4,293,166 + +1.2 4,293,166 + +1.1 4,293,167 - -1.2 4,293,210 - -3.3 4,293,276 + +0.4 4,293,276 + -1.0 4,293,276 + -0.6 4,293,276 + -1.0 4,293,277 - +0.7 4,293,277 - -3.1 4,293,277 - -0.8 4,293,277 - +0.1 4,293,277 - +0.5 4,293,277 - -1.7 4,293,277 - -1.3 4,293,280 + +1.5 4,293,280 + +0.4 4,293,281 - -0.3 4,293,281 - +0.2 4,293,299 - -2.3 4,293,391 - PP_3763 0.18 -3.2 4,293,402 + PP_3763 0.20 -0.6 4,293,403 - PP_3763 0.20 +0.8 4,293,403 - PP_3763 0.20 -0.2 4,293,403 - PP_3763 0.20 +1.6 4,293,403 - PP_3763 0.20 +2.2 4,293,636 - PP_3763 0.51 +1.3 4,293,636 - PP_3763 0.51 +1.4 4,293,729 + PP_3763 0.63 -3.5 4,293,774 + PP_3763 0.69 +0.5 4,293,774 + PP_3763 0.69 -4.0 4,293,825 + PP_3763 0.76 +1.2 4,293,948 + +1.5 4,293,948 + -0.0 4,293,948 + -0.3 4,293,948 + +0.7 4,293,949 - -0.8 4,293,949 - +1.6 4,293,949 - +1.3 4,294,052 + +0.0 4,294,053 - +0.7 4,294,053 - -2.1 4,294,072 + +0.0 4,294,073 - +0.6 4,294,073 - +0.3 4,294,073 - +1.4 4,294,073 - -1.0 4,294,073 - +1.2 4,294,090 + +1.0 4,294,090 + -0.6 4,294,090 + +1.3 4,294,091 - -3.9 4,294,091 - -1.5 4,294,138 + -1.8 4,294,138 + -1.0 4,294,138 + -3.7 4,294,138 + +1.6 4,294,139 - -0.3 4,294,139 - +0.3 4,294,139 - -0.7 4,294,151 - -2.1 4,294,161 - -3.3 4,294,161 - +2.0 4,294,170 + +0.8 4,294,171 - +1.4 4,294,171 - -4.3 4,294,171 - -4.6 4,294,208 - PP_3764 0.11 -1.5 4,294,268 + PP_3764 0.15 +1.3 4,294,268 + PP_3764 0.15 -0.6 4,294,268 + PP_3764 0.15 +0.4 4,294,283 + PP_3764 0.16 -4.1 4,294,283 + PP_3764 0.16 +1.4 4,294,284 - PP_3764 0.16 -1.4 4,294,284 - PP_3764 0.16 -3.5 4,294,284 - PP_3764 0.16 +0.7 4,294,285 + PP_3764 0.16 +0.4 4,294,333 + PP_3764 0.20 -1.0 4,294,334 - PP_3764 0.20 -3.5 4,294,334 - PP_3764 0.20 +0.4 4,294,334 - PP_3764 0.20 +1.6 4,294,334 - PP_3764 0.20 -0.5 4,294,339 + PP_3764 0.21 -1.2 4,294,340 - PP_3764 0.21 +1.7 4,294,340 - PP_3764 0.21 -3.9 4,294,393 + PP_3764 0.25 -2.6 4,294,393 + PP_3764 0.25 -1.3 4,294,393 + PP_3764 0.25 -0.3 4,294,394 - PP_3764 0.25 -4.2 4,294,406 - PP_3764 0.26 +1.8 4,294,427 - PP_3764 0.27 +0.6 4,294,447 + PP_3764 0.29 +1.0 4,294,447 + PP_3764 0.29 -2.0 4,294,447 + PP_3764 0.29 -0.1 4,294,448 - PP_3764 0.29 +0.8 4,294,492 + PP_3764 0.32 -1.2 4,294,643 + PP_3764 0.44 -0.8 4,294,643 + PP_3764 0.44 -0.2 4,294,644 - PP_3764 0.44 -2.9 4,294,644 - PP_3764 0.44 +1.0 4,294,667 - PP_3764 0.46 -1.5 4,294,696 + PP_3764 0.48 +0.9 4,294,697 - PP_3764 0.48 -0.3 4,294,745 - PP_3764 0.52 +1.0 4,294,804 + PP_3764 0.56 +0.7 4,294,804 + PP_3764 0.56 -1.7 4,294,805 - PP_3764 0.56 -1.6 4,294,903 + PP_3764 0.64 -2.6 4,294,903 + PP_3764 0.64 -4.2 4,294,904 - PP_3764 0.64 -0.6 4,294,940 - PP_3764 0.67 +0.2 4,294,940 - PP_3764 0.67 -0.6 4,294,994 - PP_3764 0.71 -0.5 4,295,126 + PP_3764 0.81 -4.1 4,295,126 + PP_3764 0.81 +0.3 4,295,126 + PP_3764 0.81 -0.0 4,295,126 + +1.6 4,295,126 + PP_3764 0.81 -0.4 4,295,127 - PP_3764 0.81 +0.4 4,295,128 + PP_3764 0.81 -2.7 4,295,203 + PP_3764 0.87 +0.3 4,295,204 - PP_3764 0.87 -4.0 4,295,307 + -0.7 4,295,308 - -0.2 4,295,308 - +1.9 4,295,308 - -2.5 4,295,308 - +1.0 4,295,390 + -4.2 4,295,390 + +0.7 4,295,391 - +1.3 4,295,391 - -4.0 4,295,502 + +0.8 4,295,541 - -2.7 4,295,573 - +0.4 4,295,616 - +0.7 4,295,706 + -1.8 4,295,718 + +0.3 4,295,719 - +0.6 4,295,719 - +1.2 4,295,719 - -0.2 4,295,719 - -2.3 4,295,719 - +0.9 4,295,719 - +0.9 4,295,719 - +0.2 4,295,719 - -3.3 4,295,840 + PP_3765 0.33 -0.8 4,295,840 + PP_3765 0.33 +0.0 4,295,860 + PP_3765 0.38 -0.2 4,295,881 - PP_3765 0.44 +1.4 4,295,968 + PP_3765 0.68 -2.8 4,295,969 - PP_3765 0.69 +0.9 4,295,969 - PP_3765 0.69 -0.9 4,296,046 + -4.1 4,296,047 - +0.5 4,296,047 - -2.8 4,296,047 - +2.0 4,296,062 + -0.4 4,296,095 + +0.3 4,296,095 + +1.8 4,296,095 + -3.3 4,296,096 - +1.7 4,296,096 - -1.0 4,296,096 - +0.9 4,296,131 - +0.6 4,296,151 - -0.5 4,296,244 + -1.2 4,296,244 + +2.7 4,296,245 - -0.8 4,296,245 - +0.9
Or see this region's nucleotide sequence