Strain Fitness in Pseudomonas putida KT2440 around PP_3170

Experiment: Growth at 30C; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3169 and PP_3170 are separated by 68 nucleotidesPP_3170 and PP_3171 are separated by 100 nucleotides PP_3169: PP_3169 - conserved membrane protein of unknown function, at 3,590,805 to 3,591,884 _3169 PP_3170: PP_3170 - Transcriptional regulator, LysR family, at 3,591,953 to 3,592,864 _3170 PP_3171: PP_3171 - conserved protein of unknown function, at 3,592,965 to 3,593,945 _3171 Position (kb) 3591 3592 3593Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3590.964 kb on + strand, within PP_3169at 3590.964 kb on + strand, within PP_3169at 3590.964 kb on + strand, within PP_3169at 3590.965 kb on - strand, within PP_3169at 3590.965 kb on - strand, within PP_3169at 3591.060 kb on - strand, within PP_3169at 3591.060 kb on - strand, within PP_3169at 3591.060 kb on - strand, within PP_3169at 3591.060 kb on - strand, within PP_3169at 3591.094 kb on + strand, within PP_3169at 3591.132 kb on + strand, within PP_3169at 3591.302 kb on + strand, within PP_3169at 3591.303 kb on - strand, within PP_3169at 3591.309 kb on + strand, within PP_3169at 3591.465 kb on + strand, within PP_3169at 3591.466 kb on - strand, within PP_3169at 3591.468 kb on + strand, within PP_3169at 3591.469 kb on - strand, within PP_3169at 3591.607 kb on - strand, within PP_3169at 3591.666 kb on + strand, within PP_3169at 3591.667 kb on - strand, within PP_3169at 3591.667 kb on - strand, within PP_3169at 3591.667 kb on - strand, within PP_3169at 3591.667 kb on - strand, within PP_3169at 3591.785 kb on + strandat 3591.785 kb on + strandat 3591.785 kb on + strandat 3591.786 kb on - strandat 3591.786 kb on - strandat 3591.786 kb on - strandat 3591.883 kb on - strandat 3591.921 kb on + strandat 3591.922 kb on - strandat 3591.922 kb on - strandat 3592.114 kb on + strand, within PP_3170at 3592.492 kb on - strand, within PP_3170at 3592.682 kb on - strand, within PP_3170at 3592.682 kb on - strand, within PP_3170at 3592.685 kb on + strand, within PP_3170at 3592.685 kb on + strand, within PP_3170at 3592.685 kb on + strand, within PP_3170at 3592.685 kb on + strand, within PP_3170at 3592.686 kb on - strand, within PP_3170at 3592.686 kb on - strand, within PP_3170at 3592.686 kb on - strand, within PP_3170at 3592.686 kb on - strandat 3592.686 kb on - strand, within PP_3170at 3592.686 kb on - strand, within PP_3170at 3592.686 kb on - strand, within PP_3170at 3592.686 kb on - strand, within PP_3170at 3592.688 kb on - strand, within PP_3170at 3592.729 kb on - strand, within PP_3170at 3592.946 kb on + strandat 3593.073 kb on + strand, within PP_3171at 3593.073 kb on + strand, within PP_3171at 3593.074 kb on - strand, within PP_3171at 3593.083 kb on - strand, within PP_3171at 3593.193 kb on - strand, within PP_3171at 3593.249 kb on + strand, within PP_3171at 3593.249 kb on + strand, within PP_3171at 3593.250 kb on - strand, within PP_3171at 3593.250 kb on - strand, within PP_3171at 3593.250 kb on - strand, within PP_3171at 3593.379 kb on + strand, within PP_3171at 3593.379 kb on + strand, within PP_3171at 3593.379 kb on + strand, within PP_3171at 3593.499 kb on + strand, within PP_3171at 3593.499 kb on + strand, within PP_3171at 3593.500 kb on - strand, within PP_3171at 3593.500 kb on - strand, within PP_3171at 3593.596 kb on - strand, within PP_3171

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 30C; with MOPS
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3,590,964 + PP_3169 0.15 +1.0
3,590,964 + PP_3169 0.15 +1.4
3,590,964 + PP_3169 0.15 -1.1
3,590,965 - PP_3169 0.15 +0.2
3,590,965 - PP_3169 0.15 +0.6
3,591,060 - PP_3169 0.24 -3.4
3,591,060 - PP_3169 0.24 +0.3
3,591,060 - PP_3169 0.24 -0.9
3,591,060 - PP_3169 0.24 +1.9
3,591,094 + PP_3169 0.27 +0.2
3,591,132 + PP_3169 0.30 -1.2
3,591,302 + PP_3169 0.46 -2.9
3,591,303 - PP_3169 0.46 -0.0
3,591,309 + PP_3169 0.47 -0.7
3,591,465 + PP_3169 0.61 +0.1
3,591,466 - PP_3169 0.61 -2.0
3,591,468 + PP_3169 0.61 +0.7
3,591,469 - PP_3169 0.61 +0.1
3,591,607 - PP_3169 0.74 +0.5
3,591,666 + PP_3169 0.80 -0.7
3,591,667 - PP_3169 0.80 +1.1
3,591,667 - PP_3169 0.80 -2.3
3,591,667 - PP_3169 0.80 -1.3
3,591,667 - PP_3169 0.80 +2.0
3,591,785 + -3.1
3,591,785 + -2.5
3,591,785 + +0.8
3,591,786 - -1.3
3,591,786 - -3.8
3,591,786 - +1.6
3,591,883 - +2.1
3,591,921 + +0.8
3,591,922 - +0.1
3,591,922 - -3.9
3,592,114 + PP_3170 0.18 -2.8
3,592,492 - PP_3170 0.59 -1.6
3,592,682 - PP_3170 0.80 -0.9
3,592,682 - PP_3170 0.80 -3.4
3,592,685 + PP_3170 0.80 -1.6
3,592,685 + PP_3170 0.80 +1.2
3,592,685 + PP_3170 0.80 -4.4
3,592,685 + PP_3170 0.80 -0.6
3,592,686 - PP_3170 0.80 -0.9
3,592,686 - PP_3170 0.80 -3.6
3,592,686 - PP_3170 0.80 +0.1
3,592,686 - -0.9
3,592,686 - PP_3170 0.80 -3.5
3,592,686 - PP_3170 0.80 +1.3
3,592,686 - PP_3170 0.80 -0.4
3,592,686 - PP_3170 0.80 +1.5
3,592,688 - PP_3170 0.81 -0.9
3,592,729 - PP_3170 0.85 -0.1
3,592,946 + -0.1
3,593,073 + PP_3171 0.11 -0.4
3,593,073 + PP_3171 0.11 +0.2
3,593,074 - PP_3171 0.11 +0.6
3,593,083 - PP_3171 0.12 +0.4
3,593,193 - PP_3171 0.23 -0.1
3,593,249 + PP_3171 0.29 +1.8
3,593,249 + PP_3171 0.29 +0.6
3,593,250 - PP_3171 0.29 -1.0
3,593,250 - PP_3171 0.29 +1.9
3,593,250 - PP_3171 0.29 -1.0
3,593,379 + PP_3171 0.42 -2.9
3,593,379 + PP_3171 0.42 -4.4
3,593,379 + PP_3171 0.42 +0.4
3,593,499 + PP_3171 0.54 +0.3
3,593,499 + PP_3171 0.54 +0.9
3,593,500 - PP_3171 0.55 +1.8
3,593,500 - PP_3171 0.55 +0.0
3,593,596 - PP_3171 0.64 -0.6

Or see this region's nucleotide sequence