Strain Fitness in Pseudomonas putida KT2440 around PP_2368

Experiment: Growth at 30C; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2367 and PP_2368 are separated by 5 nucleotidesPP_2368 and PP_2369 are separated by 204 nucleotides PP_2367: PP_2367 - putative inner membrane transport protein, at 2,700,643 to 2,701,830 _2367 PP_2368: PP_2368 - 2,5-diketo-D-gluconate reductase, at 2,701,836 to 2,702,639 _2368 PP_2369: PP_2369 - Leucine-rich repeat domain protein, at 2,702,844 to 2,707,031 _2369 Position (kb) 2701 2702 2703Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2700.893 kb on - strand, within PP_2367at 2700.893 kb on - strand, within PP_2367at 2701.100 kb on - strand, within PP_2367at 2701.148 kb on + strand, within PP_2367at 2701.148 kb on + strand, within PP_2367at 2701.148 kb on + strand, within PP_2367at 2701.149 kb on - strand, within PP_2367at 2701.149 kb on - strand, within PP_2367at 2701.149 kb on - strand, within PP_2367at 2701.149 kb on - strand, within PP_2367at 2701.154 kb on + strand, within PP_2367at 2701.155 kb on - strand, within PP_2367at 2701.155 kb on - strand, within PP_2367at 2701.155 kb on - strand, within PP_2367at 2701.283 kb on + strand, within PP_2367at 2701.535 kb on + strand, within PP_2367at 2701.535 kb on + strand, within PP_2367at 2701.536 kb on - strand, within PP_2367at 2701.536 kb on - strand, within PP_2367at 2701.538 kb on + strand, within PP_2367at 2701.539 kb on - strand, within PP_2367at 2701.539 kb on - strand, within PP_2367at 2701.539 kb on - strand, within PP_2367at 2701.539 kb on - strand, within PP_2367at 2701.539 kb on - strand, within PP_2367at 2701.670 kb on + strand, within PP_2367at 2701.670 kb on + strand, within PP_2367at 2701.671 kb on - strand, within PP_2367at 2701.993 kb on + strand, within PP_2368at 2701.993 kb on + strand, within PP_2368at 2702.036 kb on + strand, within PP_2368at 2702.037 kb on - strand, within PP_2368at 2702.093 kb on - strand, within PP_2368at 2702.107 kb on + strand, within PP_2368at 2702.107 kb on + strand, within PP_2368at 2702.107 kb on + strand, within PP_2368at 2702.108 kb on - strand, within PP_2368at 2702.108 kb on - strand, within PP_2368at 2702.108 kb on - strand, within PP_2368at 2702.167 kb on + strand, within PP_2368at 2702.167 kb on + strand, within PP_2368at 2702.311 kb on + strand, within PP_2368at 2702.325 kb on + strand, within PP_2368at 2702.431 kb on + strand, within PP_2368at 2702.432 kb on - strand, within PP_2368at 2702.432 kb on - strand, within PP_2368at 2702.524 kb on + strand, within PP_2368at 2702.525 kb on - strand, within PP_2368at 2702.705 kb on + strandat 2702.706 kb on - strandat 2702.749 kb on - strandat 2702.776 kb on + strandat 2702.777 kb on - strandat 2702.781 kb on - strandat 2702.781 kb on - strandat 2702.860 kb on + strandat 2702.861 kb on - strandat 2702.986 kb on + strandat 2702.986 kb on + strandat 2702.987 kb on - strandat 2702.987 kb on - strandat 2702.987 kb on - strandat 2703.007 kb on + strandat 2703.076 kb on + strandat 2703.077 kb on - strandat 2703.143 kb on - strandat 2703.143 kb on - strandat 2703.146 kb on + strandat 2703.147 kb on - strandat 2703.200 kb on + strandat 2703.283 kb on + strand, within PP_2369at 2703.284 kb on - strand, within PP_2369at 2703.324 kb on - strand, within PP_2369

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 30C; with MOPS
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2,700,893 - PP_2367 0.21 -3.8
2,700,893 - PP_2367 0.21 +0.2
2,701,100 - PP_2367 0.38 +1.8
2,701,148 + PP_2367 0.43 +1.1
2,701,148 + PP_2367 0.43 -0.4
2,701,148 + PP_2367 0.43 +0.3
2,701,149 - PP_2367 0.43 -1.7
2,701,149 - PP_2367 0.43 -0.8
2,701,149 - PP_2367 0.43 +0.6
2,701,149 - PP_2367 0.43 -1.1
2,701,154 + PP_2367 0.43 +0.5
2,701,155 - PP_2367 0.43 +0.8
2,701,155 - PP_2367 0.43 -3.0
2,701,155 - PP_2367 0.43 -2.2
2,701,283 + PP_2367 0.54 +0.2
2,701,535 + PP_2367 0.75 -1.7
2,701,535 + PP_2367 0.75 +1.6
2,701,536 - PP_2367 0.75 -0.4
2,701,536 - PP_2367 0.75 -1.6
2,701,538 + PP_2367 0.75 -4.4
2,701,539 - PP_2367 0.75 -0.6
2,701,539 - PP_2367 0.75 -0.2
2,701,539 - PP_2367 0.75 -0.0
2,701,539 - PP_2367 0.75 -0.2
2,701,539 - PP_2367 0.75 -0.3
2,701,670 + PP_2367 0.86 -0.7
2,701,670 + PP_2367 0.86 -1.2
2,701,671 - PP_2367 0.87 +1.7
2,701,993 + PP_2368 0.20 -4.5
2,701,993 + PP_2368 0.20 -0.0
2,702,036 + PP_2368 0.25 -1.0
2,702,037 - PP_2368 0.25 -3.6
2,702,093 - PP_2368 0.32 -3.7
2,702,107 + PP_2368 0.34 -0.1
2,702,107 + PP_2368 0.34 -1.0
2,702,107 + PP_2368 0.34 +0.7
2,702,108 - PP_2368 0.34 -2.1
2,702,108 - PP_2368 0.34 -0.1
2,702,108 - PP_2368 0.34 -0.5
2,702,167 + PP_2368 0.41 +0.9
2,702,167 + PP_2368 0.41 -4.3
2,702,311 + PP_2368 0.59 -0.6
2,702,325 + PP_2368 0.61 +1.0
2,702,431 + PP_2368 0.74 +0.3
2,702,432 - PP_2368 0.74 -0.9
2,702,432 - PP_2368 0.74 +0.4
2,702,524 + PP_2368 0.86 +0.2
2,702,525 - PP_2368 0.86 -0.2
2,702,705 + -3.1
2,702,706 - -0.1
2,702,749 - -0.5
2,702,776 + +1.3
2,702,777 - -0.3
2,702,781 - +0.0
2,702,781 - +0.9
2,702,860 + -0.7
2,702,861 - +0.0
2,702,986 + +0.2
2,702,986 + +0.5
2,702,987 - -0.8
2,702,987 - -0.4
2,702,987 - +0.1
2,703,007 + +1.9
2,703,076 + +0.5
2,703,077 - +0.0
2,703,143 - -3.4
2,703,143 - +1.0
2,703,146 + +0.0
2,703,147 - -3.9
2,703,200 + -3.5
2,703,283 + PP_2369 0.10 -0.2
2,703,284 - PP_2369 0.11 -2.5
2,703,324 - PP_2369 0.11 +1.4

Or see this region's nucleotide sequence