Strain Fitness in Pseudomonas putida KT2440 around PP_2308

Experiment: Growth at 30C; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2306 and PP_2307 are separated by 14 nucleotidesPP_2307 and PP_2308 are separated by 77 nucleotidesPP_2308 and PP_2309 are separated by 41 nucleotidesPP_2309 and PP_2310 are separated by 75 nucleotides PP_2306: PP_2306 - conserved exported protein of unknown function, at 2,636,745 to 2,637,023 _2306 PP_2307: PP_2307 - conserved protein of unknown function, at 2,637,038 to 2,637,817 _2307 PP_2308: PP_2308 - putative Acyl-CoA thioesterase II, at 2,637,895 to 2,638,692 _2308 PP_2309: PP_2309 - conserved protein of unknown function, at 2,638,734 to 2,639,102 _2309 PP_2310: PP_2310 - Methyl-accepting chemotaxis transducer, at 2,639,178 to 2,640,656 _2310 Position (kb) 2637 2638 2639Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2636.899 kb on - strand, within PP_2306at 2636.995 kb on - strand, within PP_2306at 2637.037 kb on + strandat 2637.037 kb on + strandat 2637.037 kb on + strandat 2637.037 kb on + strandat 2637.037 kb on + strandat 2637.038 kb on - strandat 2637.038 kb on - strandat 2637.038 kb on - strandat 2637.038 kb on - strandat 2637.038 kb on - strandat 2637.038 kb on - strandat 2637.038 kb on - strandat 2637.072 kb on + strandat 2637.124 kb on + strand, within PP_2307at 2637.251 kb on - strand, within PP_2307at 2637.456 kb on + strand, within PP_2307at 2637.822 kb on + strandat 2637.853 kb on + strandat 2637.854 kb on - strandat 2638.009 kb on + strand, within PP_2308at 2638.009 kb on + strand, within PP_2308at 2638.009 kb on + strand, within PP_2308at 2638.010 kb on - strand, within PP_2308at 2638.010 kb on - strand, within PP_2308at 2638.010 kb on - strand, within PP_2308at 2638.010 kb on - strand, within PP_2308at 2638.292 kb on - strand, within PP_2308at 2638.293 kb on + strand, within PP_2308at 2638.293 kb on + strand, within PP_2308at 2638.294 kb on - strand, within PP_2308at 2638.509 kb on + strand, within PP_2308at 2638.510 kb on - strand, within PP_2308at 2638.510 kb on - strand, within PP_2308at 2638.825 kb on - strand, within PP_2309at 2639.179 kb on + strandat 2639.180 kb on - strandat 2639.181 kb on + strandat 2639.181 kb on + strandat 2639.181 kb on + strandat 2639.181 kb on + strandat 2639.181 kb on + strandat 2639.181 kb on + strandat 2639.181 kb on + strandat 2639.182 kb on - strandat 2639.182 kb on - strandat 2639.182 kb on - strandat 2639.326 kb on - strand, within PP_2310at 2639.455 kb on + strand, within PP_2310at 2639.456 kb on - strand, within PP_2310at 2639.456 kb on - strand, within PP_2310at 2639.599 kb on - strand, within PP_2310at 2639.663 kb on + strand, within PP_2310at 2639.664 kb on - strand, within PP_2310at 2639.664 kb on - strand, within PP_2310at 2639.664 kb on - strand, within PP_2310

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 30C; with MOPS
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2,636,899 - PP_2306 0.55 +0.9
2,636,995 - PP_2306 0.90 +1.0
2,637,037 + -0.2
2,637,037 + -1.1
2,637,037 + -0.2
2,637,037 + -3.5
2,637,037 + +0.4
2,637,038 - +1.2
2,637,038 - +0.5
2,637,038 - -1.8
2,637,038 - +0.7
2,637,038 - +0.9
2,637,038 - -0.3
2,637,038 - -4.0
2,637,072 + -0.5
2,637,124 + PP_2307 0.11 -0.5
2,637,251 - PP_2307 0.27 -0.2
2,637,456 + PP_2307 0.54 +0.6
2,637,822 + -4.2
2,637,853 + -4.5
2,637,854 - -0.4
2,638,009 + PP_2308 0.14 +0.1
2,638,009 + PP_2308 0.14 -1.6
2,638,009 + PP_2308 0.14 +0.3
2,638,010 - PP_2308 0.14 +0.2
2,638,010 - PP_2308 0.14 -0.5
2,638,010 - PP_2308 0.14 -0.1
2,638,010 - PP_2308 0.14 +0.0
2,638,292 - PP_2308 0.50 -3.0
2,638,293 + PP_2308 0.50 -0.1
2,638,293 + PP_2308 0.50 -0.1
2,638,294 - PP_2308 0.50 +1.6
2,638,509 + PP_2308 0.77 +0.2
2,638,510 - PP_2308 0.77 -4.0
2,638,510 - PP_2308 0.77 +0.2
2,638,825 - PP_2309 0.25 -4.7
2,639,179 + +1.4
2,639,180 - +1.1
2,639,181 + +0.4
2,639,181 + +0.1
2,639,181 + +0.4
2,639,181 + +0.8
2,639,181 + +0.3
2,639,181 + -1.1
2,639,181 + -0.8
2,639,182 - +0.5
2,639,182 - -0.5
2,639,182 - +1.2
2,639,326 - PP_2310 0.10 +1.3
2,639,455 + PP_2310 0.19 -3.9
2,639,456 - PP_2310 0.19 +1.9
2,639,456 - PP_2310 0.19 -0.1
2,639,599 - PP_2310 0.28 -0.9
2,639,663 + PP_2310 0.33 -1.5
2,639,664 - PP_2310 0.33 -4.0
2,639,664 - PP_2310 0.33 -2.3
2,639,664 - PP_2310 0.33 +1.0

Or see this region's nucleotide sequence