Strain Fitness in Pseudomonas putida KT2440 around PP_1677

Experiment: Growth at 30C; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1675 and PP_1676 overlap by 8 nucleotidesPP_1676 and PP_1677 overlap by 4 nucleotidesPP_1677 and PP_1678 are separated by 1 nucleotidesPP_1678 and PP_1679 overlap by 4 nucleotides PP_1675: PP_1675 - Subunit of adenosylcobinamide-phosphate synthase beta component, at 1,869,811 to 1,870,734 _1675 PP_1676: PP_1676 - subunit of adenosylcobinamide-phosphate synthase beta component, at 1,870,727 to 1,871,719 _1676 PP_1677: PP_1677 - Adenosyl-cobyric acid synthase, at 1,871,716 to 1,873,170 _1677 PP_1678: PP_1678 - bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase, at 1,873,172 to 1,873,693 _1678 PP_1679: PP_1679 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 1,873,690 to 1,874,745 _1679 Position (kb) 1871 1872 1873 1874Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1870.720 kb on + strandat 1870.720 kb on + strandat 1870.720 kb on + strandat 1870.720 kb on + strandat 1870.720 kb on + strandat 1870.721 kb on - strandat 1870.721 kb on - strandat 1870.721 kb on - strandat 1870.721 kb on - strandat 1870.722 kb on + strandat 1870.769 kb on + strandat 1870.770 kb on - strandat 1870.907 kb on + strand, within PP_1676at 1870.908 kb on - strand, within PP_1676at 1870.910 kb on + strand, within PP_1676at 1870.911 kb on - strand, within PP_1676at 1870.978 kb on + strand, within PP_1676at 1870.978 kb on + strand, within PP_1676at 1870.979 kb on - strand, within PP_1676at 1870.979 kb on - strand, within PP_1676at 1870.979 kb on - strand, within PP_1676at 1871.013 kb on - strand, within PP_1676at 1871.027 kb on + strand, within PP_1676at 1871.028 kb on - strand, within PP_1676at 1871.525 kb on - strand, within PP_1676at 1871.550 kb on - strand, within PP_1676at 1871.550 kb on - strand, within PP_1676at 1871.558 kb on - strand, within PP_1676at 1871.916 kb on - strand, within PP_1677at 1872.034 kb on - strand, within PP_1677at 1872.034 kb on - strand, within PP_1677at 1872.388 kb on + strand, within PP_1677at 1872.462 kb on - strand, within PP_1677at 1872.462 kb on - strand, within PP_1677at 1872.696 kb on + strand, within PP_1677at 1872.793 kb on + strand, within PP_1677at 1872.794 kb on - strand, within PP_1677at 1872.875 kb on - strand, within PP_1677at 1872.988 kb on + strand, within PP_1677at 1872.988 kb on + strand, within PP_1677at 1872.988 kb on + strand, within PP_1677at 1872.989 kb on - strand, within PP_1677at 1873.073 kb on - strandat 1873.073 kb on - strandat 1873.178 kb on - strandat 1873.259 kb on + strand, within PP_1678at 1873.259 kb on + strand, within PP_1678at 1873.586 kb on + strand, within PP_1678at 1873.586 kb on + strand, within PP_1678at 1873.586 kb on + strand, within PP_1678at 1873.587 kb on - strand, within PP_1678at 1873.668 kb on + strandat 1873.668 kb on + strandat 1873.669 kb on - strandat 1873.669 kb on - strandat 1873.689 kb on + strandat 1873.689 kb on + strandat 1873.689 kb on + strandat 1873.689 kb on + strandat 1873.689 kb on + strandat 1873.689 kb on + strandat 1873.690 kb on - strandat 1873.690 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 30C; with MOPS
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1,870,720 + +0.6
1,870,720 + +0.3
1,870,720 + +1.3
1,870,720 + -0.9
1,870,720 + +1.8
1,870,721 - -3.6
1,870,721 - +1.9
1,870,721 - -1.8
1,870,721 - -0.9
1,870,722 + +0.6
1,870,769 + -2.5
1,870,770 - -3.6
1,870,907 + PP_1676 0.18 -3.0
1,870,908 - PP_1676 0.18 -3.2
1,870,910 + PP_1676 0.18 -3.4
1,870,911 - PP_1676 0.19 +0.4
1,870,978 + PP_1676 0.25 -0.1
1,870,978 + PP_1676 0.25 -4.0
1,870,979 - PP_1676 0.25 +1.5
1,870,979 - PP_1676 0.25 -3.4
1,870,979 - PP_1676 0.25 -3.4
1,871,013 - PP_1676 0.29 -0.2
1,871,027 + PP_1676 0.30 -2.8
1,871,028 - PP_1676 0.30 -3.5
1,871,525 - PP_1676 0.80 -0.4
1,871,550 - PP_1676 0.83 +1.6
1,871,550 - PP_1676 0.83 -0.4
1,871,558 - PP_1676 0.84 -3.3
1,871,916 - PP_1677 0.14 -2.4
1,872,034 - PP_1677 0.22 -2.2
1,872,034 - PP_1677 0.22 +0.1
1,872,388 + PP_1677 0.46 -2.6
1,872,462 - PP_1677 0.51 -3.1
1,872,462 - PP_1677 0.51 -2.3
1,872,696 + PP_1677 0.67 +0.3
1,872,793 + PP_1677 0.74 -2.8
1,872,794 - PP_1677 0.74 +0.6
1,872,875 - PP_1677 0.80 -3.4
1,872,988 + PP_1677 0.87 -0.7
1,872,988 + PP_1677 0.87 -1.3
1,872,988 + PP_1677 0.87 -3.3
1,872,989 - PP_1677 0.87 -3.3
1,873,073 - -3.6
1,873,073 - -3.8
1,873,178 - -0.2
1,873,259 + PP_1678 0.17 -3.1
1,873,259 + PP_1678 0.17 +0.3
1,873,586 + PP_1678 0.79 +0.1
1,873,586 + PP_1678 0.79 -0.1
1,873,586 + PP_1678 0.79 -0.1
1,873,587 - PP_1678 0.80 -1.5
1,873,668 + -0.6
1,873,668 + +2.1
1,873,669 - -1.9
1,873,669 - -0.2
1,873,689 + -0.4
1,873,689 + -4.2
1,873,689 + +0.8
1,873,689 + -1.8
1,873,689 + +0.7
1,873,689 + +0.6
1,873,690 - -3.5
1,873,690 - +0.4

Or see this region's nucleotide sequence