Strain Fitness in Pseudomonas putida KT2440 around PP_1575

Experiment: Growth at 30C; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1573 and PP_1574 are separated by 8 nucleotidesPP_1574 and PP_1575 are separated by 62 nucleotidesPP_1575 and PP_1576 are separated by 61 nucleotidesPP_1576 and PP_1577 are separated by 46 nucleotides PP_1573: PP_1573 - putative Major tail protein, at 1,764,093 to 1,764,827 _1573 PP_1574: PP_1574 - conserved protein of unknown function, at 1,764,836 to 1,765,306 _1574 PP_1575: PP_1575 - conserved protein of unknown function, at 1,765,369 to 1,765,530 _1575 PP_1576: PP_1576 - putative Immunity protein, at 1,765,592 to 1,765,915 _1576 PP_1577: PP_1577 - Phage tail tape meausure protein, lambda family, at 1,765,962 to 1,768,403 _1577 Position (kb) 1765 1766Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1764.410 kb on + strand, within PP_1573at 1764.411 kb on - strand, within PP_1573at 1764.411 kb on - strand, within PP_1573at 1764.411 kb on - strand, within PP_1573at 1764.411 kb on - strand, within PP_1573at 1764.475 kb on - strand, within PP_1573at 1764.591 kb on + strand, within PP_1573at 1764.594 kb on - strand, within PP_1573at 1764.594 kb on - strand, within PP_1573at 1764.594 kb on - strand, within PP_1573at 1764.606 kb on - strand, within PP_1573at 1764.647 kb on + strand, within PP_1573at 1764.647 kb on + strand, within PP_1573at 1764.718 kb on - strand, within PP_1573at 1764.944 kb on + strand, within PP_1574at 1764.944 kb on + strand, within PP_1574at 1764.944 kb on + strand, within PP_1574at 1764.945 kb on - strand, within PP_1574at 1764.945 kb on - strand, within PP_1574at 1764.945 kb on - strand, within PP_1574at 1765.000 kb on + strand, within PP_1574at 1765.000 kb on + strand, within PP_1574at 1765.085 kb on - strand, within PP_1574at 1765.182 kb on + strand, within PP_1574at 1765.183 kb on - strand, within PP_1574at 1765.183 kb on - strand, within PP_1574at 1765.183 kb on - strand, within PP_1574at 1765.337 kb on - strandat 1765.337 kb on - strandat 1765.450 kb on + strand, within PP_1575at 1765.451 kb on - strand, within PP_1575at 1765.518 kb on + strandat 1765.519 kb on - strandat 1765.519 kb on - strandat 1765.519 kb on - strandat 1765.545 kb on + strandat 1765.559 kb on + strandat 1765.560 kb on - strandat 1765.560 kb on - strandat 1765.616 kb on + strandat 1765.616 kb on + strandat 1765.617 kb on - strandat 1765.633 kb on - strand, within PP_1576at 1765.646 kb on + strand, within PP_1576at 1765.646 kb on + strand, within PP_1576at 1765.691 kb on + strand, within PP_1576at 1765.759 kb on - strand, within PP_1576at 1765.819 kb on + strand, within PP_1576at 1765.820 kb on - strand, within PP_1576at 1765.823 kb on + strand, within PP_1576at 1765.823 kb on + strand, within PP_1576at 1765.870 kb on - strand, within PP_1576at 1765.908 kb on + strandat 1765.908 kb on + strandat 1765.944 kb on + strandat 1766.002 kb on + strandat 1766.011 kb on + strandat 1766.036 kb on + strandat 1766.037 kb on - strandat 1766.095 kb on + strandat 1766.095 kb on + strandat 1766.096 kb on - strandat 1766.099 kb on + strandat 1766.099 kb on + strandat 1766.099 kb on + strandat 1766.099 kb on + strandat 1766.099 kb on + strandat 1766.099 kb on + strandat 1766.099 kb on + strandat 1766.100 kb on - strandat 1766.100 kb on - strandat 1766.100 kb on - strandat 1766.191 kb on + strandat 1766.192 kb on - strandat 1766.233 kb on + strand, within PP_1577at 1766.233 kb on + strand, within PP_1577at 1766.233 kb on + strand, within PP_1577at 1766.234 kb on - strand, within PP_1577at 1766.254 kb on + strand, within PP_1577at 1766.255 kb on - strand, within PP_1577at 1766.260 kb on + strand, within PP_1577at 1766.260 kb on + strand, within PP_1577at 1766.260 kb on + strand, within PP_1577at 1766.261 kb on - strand, within PP_1577at 1766.308 kb on + strand, within PP_1577at 1766.308 kb on + strand, within PP_1577at 1766.308 kb on + strand, within PP_1577at 1766.309 kb on - strand, within PP_1577at 1766.309 kb on - strand, within PP_1577at 1766.321 kb on - strand, within PP_1577at 1766.321 kb on - strand, within PP_1577at 1766.369 kb on + strand, within PP_1577at 1766.404 kb on + strand, within PP_1577at 1766.405 kb on - strand, within PP_1577at 1766.430 kb on + strand, within PP_1577at 1766.430 kb on + strand, within PP_1577at 1766.431 kb on - strand, within PP_1577at 1766.454 kb on - strand, within PP_1577at 1766.481 kb on + strand, within PP_1577at 1766.481 kb on + strand, within PP_1577at 1766.482 kb on - strand, within PP_1577at 1766.492 kb on + strand, within PP_1577at 1766.492 kb on + strand, within PP_1577

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 30C; with MOPS
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1,764,410 + PP_1573 0.43 +1.5
1,764,411 - PP_1573 0.43 -3.7
1,764,411 - PP_1573 0.43 +1.9
1,764,411 - PP_1573 0.43 -1.1
1,764,411 - PP_1573 0.43 -0.8
1,764,475 - PP_1573 0.52 +0.6
1,764,591 + PP_1573 0.68 -1.7
1,764,594 - PP_1573 0.68 -2.9
1,764,594 - PP_1573 0.68 -1.8
1,764,594 - PP_1573 0.68 +0.3
1,764,606 - PP_1573 0.70 +1.1
1,764,647 + PP_1573 0.75 +1.3
1,764,647 + PP_1573 0.75 +0.9
1,764,718 - PP_1573 0.85 -0.3
1,764,944 + PP_1574 0.23 -4.3
1,764,944 + PP_1574 0.23 -0.5
1,764,944 + PP_1574 0.23 +0.7
1,764,945 - PP_1574 0.23 -1.3
1,764,945 - PP_1574 0.23 +0.6
1,764,945 - PP_1574 0.23 +0.4
1,765,000 + PP_1574 0.35 +0.8
1,765,000 + PP_1574 0.35 -1.7
1,765,085 - PP_1574 0.53 +1.3
1,765,182 + PP_1574 0.73 -1.7
1,765,183 - PP_1574 0.74 +0.7
1,765,183 - PP_1574 0.74 -2.6
1,765,183 - PP_1574 0.74 +0.3
1,765,337 - -1.5
1,765,337 - -2.3
1,765,450 + PP_1575 0.50 +1.2
1,765,451 - PP_1575 0.51 +0.9
1,765,518 + -0.9
1,765,519 - +0.7
1,765,519 - +0.9
1,765,519 - +1.4
1,765,545 + +0.5
1,765,559 + +1.4
1,765,560 - -1.5
1,765,560 - +0.5
1,765,616 + +1.0
1,765,616 + +0.5
1,765,617 - +0.3
1,765,633 - PP_1576 0.13 -1.3
1,765,646 + PP_1576 0.17 +0.2
1,765,646 + PP_1576 0.17 -0.8
1,765,691 + PP_1576 0.31 -2.5
1,765,759 - PP_1576 0.52 +0.4
1,765,819 + PP_1576 0.70 -0.5
1,765,820 - PP_1576 0.70 -2.2
1,765,823 + PP_1576 0.71 -0.6
1,765,823 + PP_1576 0.71 +0.8
1,765,870 - PP_1576 0.86 +0.8
1,765,908 + -3.6
1,765,908 + -2.3
1,765,944 + +2.3
1,766,002 + -2.8
1,766,011 + +1.8
1,766,036 + -0.1
1,766,037 - -0.2
1,766,095 + +1.6
1,766,095 + +0.5
1,766,096 - -0.2
1,766,099 + +2.8
1,766,099 + -0.9
1,766,099 + -3.5
1,766,099 + +1.2
1,766,099 + +0.7
1,766,099 + +0.5
1,766,099 + -2.9
1,766,100 - +3.0
1,766,100 - -0.1
1,766,100 - +0.5
1,766,191 + -2.6
1,766,192 - -3.3
1,766,233 + PP_1577 0.11 -3.0
1,766,233 + PP_1577 0.11 +0.1
1,766,233 + PP_1577 0.11 -2.9
1,766,234 - PP_1577 0.11 +0.3
1,766,254 + PP_1577 0.12 +2.2
1,766,255 - PP_1577 0.12 +0.9
1,766,260 + PP_1577 0.12 +1.6
1,766,260 + PP_1577 0.12 -0.1
1,766,260 + PP_1577 0.12 +2.5
1,766,261 - PP_1577 0.12 -1.0
1,766,308 + PP_1577 0.14 -0.0
1,766,308 + PP_1577 0.14 -0.2
1,766,308 + PP_1577 0.14 -3.3
1,766,309 - PP_1577 0.14 +2.1
1,766,309 - PP_1577 0.14 +1.6
1,766,321 - PP_1577 0.15 -0.9
1,766,321 - PP_1577 0.15 +1.6
1,766,369 + PP_1577 0.17 -0.5
1,766,404 + PP_1577 0.18 +0.9
1,766,405 - PP_1577 0.18 +2.6
1,766,430 + PP_1577 0.19 -1.7
1,766,430 + PP_1577 0.19 -1.6
1,766,431 - PP_1577 0.19 -4.5
1,766,454 - PP_1577 0.20 -2.3
1,766,481 + PP_1577 0.21 -4.2
1,766,481 + PP_1577 0.21 +0.7
1,766,482 - PP_1577 0.21 -3.6
1,766,492 + PP_1577 0.22 -0.8
1,766,492 + PP_1577 0.22 +1.5

Or see this region's nucleotide sequence