Strain Fitness in Pseudomonas putida KT2440 around PP_1546

Experiment: Growth at 30C; with MOPS

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_1544 and PP_1545 are separated by 81 nucleotidesPP_1545 and PP_1546 overlap by 4 nucleotidesPP_1546 and PP_5473 are separated by 18 nucleotidesPP_5473 and PP_5474 are separated by 530 nucleotidesPP_5474 and PP_1548 overlap by 4 nucleotides PP_1544: PP_1544 - conserved protein of unknown function, at 1,746,079 to 1,746,465 _1544 PP_1545: PP_1545 - conserved protein of unknown function, at 1,746,547 to 1,747,005 _1545 PP_1546: PP_1546 - conserved protein of unknown function, at 1,747,002 to 1,747,271 _1546 PP_5473: PP_5473 - putative transcriptional regulator, LuxR family, at 1,747,290 to 1,747,508 _5473 PP_5474: PP_5474 - conserved protein of unknown function of phage origin, at 1,748,039 to 1,748,233 _5474 PP_1548: PP_1548 - conserved protein of unknown function, at 1,748,230 to 1,748,667 _1548 Position (kb) 1747 1748Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1746.100 kb on - strandat 1746.117 kb on + strandat 1746.118 kb on - strand, within PP_1544at 1746.191 kb on - strand, within PP_1544at 1746.202 kb on + strand, within PP_1544at 1746.206 kb on + strand, within PP_1544at 1746.207 kb on - strand, within PP_1544at 1746.207 kb on - strand, within PP_1544at 1746.619 kb on + strand, within PP_1545at 1746.619 kb on + strand, within PP_1545at 1746.620 kb on - strand, within PP_1545at 1746.696 kb on + strand, within PP_1545at 1746.697 kb on - strand, within PP_1545at 1746.697 kb on - strand, within PP_1545at 1746.731 kb on + strand, within PP_1545at 1746.732 kb on - strand, within PP_1545at 1746.806 kb on + strand, within PP_1545at 1746.806 kb on + strand, within PP_1545at 1746.807 kb on - strand, within PP_1545at 1746.807 kb on - strand, within PP_1545at 1746.847 kb on + strand, within PP_1545at 1746.847 kb on + strand, within PP_1545at 1746.848 kb on - strand, within PP_1545at 1746.848 kb on - strand, within PP_1545at 1746.879 kb on + strand, within PP_1545at 1746.880 kb on - strand, within PP_1545at 1746.880 kb on - strand, within PP_1545at 1746.880 kb on - strand, within PP_1545at 1746.880 kb on - strand, within PP_1545at 1747.073 kb on - strand, within PP_1546at 1747.073 kb on - strand, within PP_1546at 1747.078 kb on + strand, within PP_1546at 1747.150 kb on + strand, within PP_1546at 1747.170 kb on + strand, within PP_1546at 1747.224 kb on + strand, within PP_1546at 1747.224 kb on + strand, within PP_1546at 1747.225 kb on - strand, within PP_1546at 1747.300 kb on + strandat 1747.456 kb on + strand, within PP_5473at 1747.470 kb on + strand, within PP_5473at 1747.577 kb on + strandat 1747.578 kb on - strandat 1747.578 kb on - strandat 1747.578 kb on - strandat 1747.578 kb on - strandat 1747.721 kb on + strandat 1747.721 kb on + strandat 1747.722 kb on - strandat 1747.771 kb on + strandat 1747.793 kb on + strandat 1747.803 kb on - strandat 1747.825 kb on - strandat 1747.825 kb on - strandat 1747.888 kb on + strandat 1747.889 kb on - strandat 1747.889 kb on - strandat 1747.919 kb on - strandat 1748.001 kb on + strandat 1748.001 kb on + strandat 1748.001 kb on + strandat 1748.002 kb on - strandat 1748.002 kb on - strandat 1748.002 kb on - strandat 1748.002 kb on - strandat 1748.002 kb on - strandat 1748.040 kb on + strandat 1748.041 kb on - strandat 1748.237 kb on + strandat 1748.237 kb on + strandat 1748.237 kb on + strandat 1748.237 kb on + strandat 1748.237 kb on + strandat 1748.238 kb on - strandat 1748.238 kb on - strandat 1748.238 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 30C; with MOPS
remove
1,746,100 - -0.7
1,746,117 + +0.3
1,746,118 - PP_1544 0.10 +2.3
1,746,191 - PP_1544 0.29 +0.3
1,746,202 + PP_1544 0.32 +2.2
1,746,206 + PP_1544 0.33 -0.1
1,746,207 - PP_1544 0.33 -3.0
1,746,207 - PP_1544 0.33 -2.3
1,746,619 + PP_1545 0.16 +1.1
1,746,619 + PP_1545 0.16 +1.2
1,746,620 - PP_1545 0.16 -4.1
1,746,696 + PP_1545 0.32 -2.2
1,746,697 - PP_1545 0.33 +2.4
1,746,697 - PP_1545 0.33 -2.3
1,746,731 + PP_1545 0.40 -0.0
1,746,732 - PP_1545 0.40 -2.3
1,746,806 + PP_1545 0.56 +0.7
1,746,806 + PP_1545 0.56 +0.4
1,746,807 - PP_1545 0.57 +0.6
1,746,807 - PP_1545 0.57 -3.2
1,746,847 + PP_1545 0.65 +1.1
1,746,847 + PP_1545 0.65 +0.4
1,746,848 - PP_1545 0.66 +0.8
1,746,848 - PP_1545 0.66 -3.1
1,746,879 + PP_1545 0.72 -2.8
1,746,880 - PP_1545 0.73 +0.9
1,746,880 - PP_1545 0.73 +0.3
1,746,880 - PP_1545 0.73 +2.0
1,746,880 - PP_1545 0.73 +2.1
1,747,073 - PP_1546 0.26 +1.5
1,747,073 - PP_1546 0.26 +1.5
1,747,078 + PP_1546 0.28 -1.6
1,747,150 + PP_1546 0.55 -0.3
1,747,170 + PP_1546 0.62 +0.5
1,747,224 + PP_1546 0.82 +1.1
1,747,224 + PP_1546 0.82 +2.1
1,747,225 - PP_1546 0.83 -4.3
1,747,300 + -0.4
1,747,456 + PP_5473 0.76 +0.5
1,747,470 + PP_5473 0.82 -4.1
1,747,577 + -1.4
1,747,578 - +0.6
1,747,578 - +1.5
1,747,578 - -0.4
1,747,578 - +1.3
1,747,721 + -0.7
1,747,721 + +0.5
1,747,722 - +0.9
1,747,771 + -2.5
1,747,793 + +0.7
1,747,803 - +0.4
1,747,825 - +0.3
1,747,825 - +0.7
1,747,888 + -2.0
1,747,889 - -4.3
1,747,889 - +0.5
1,747,919 - -4.8
1,748,001 + +1.0
1,748,001 + -0.7
1,748,001 + -0.1
1,748,002 - +2.3
1,748,002 - +1.1
1,748,002 - -1.4
1,748,002 - -1.8
1,748,002 - +2.8
1,748,040 + +0.8
1,748,041 - -0.2
1,748,237 + +1.0
1,748,237 + -0.8
1,748,237 + +1.6
1,748,237 + -0.9
1,748,237 + +1.8
1,748,238 - +0.3
1,748,238 - -0.6
1,748,238 - +1.5

Or see this region's nucleotide sequence