Strain Fitness in Pseudomonas putida KT2440 around PP_1288

Experiment: Growth at 30C; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1287 and PP_1288 are separated by 77 nucleotidesPP_1288 and PP_1289 are separated by 800 nucleotides PP_1287: PP_1287 - Glycosyltransferase alg8, at 1,471,336 to 1,472,826 _1287 PP_1288: PP_1288 - GDP-mannose 6-dehydrogenase, at 1,472,904 to 1,474,220 _1288 PP_1289: PP_1289 - conserved protein of unknown function, DUF328 family, at 1,475,021 to 1,475,800 _1289 Position (kb) 1472 1473 1474 1475Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1472.188 kb on + strand, within PP_1287at 1472.390 kb on + strand, within PP_1287at 1472.498 kb on + strand, within PP_1287at 1472.499 kb on - strand, within PP_1287at 1472.499 kb on - strand, within PP_1287at 1472.499 kb on - strand, within PP_1287at 1472.526 kb on + strand, within PP_1287at 1472.549 kb on + strand, within PP_1287at 1472.549 kb on + strand, within PP_1287at 1472.550 kb on - strand, within PP_1287at 1472.575 kb on - strand, within PP_1287at 1472.603 kb on + strand, within PP_1287at 1472.603 kb on + strand, within PP_1287at 1472.610 kb on - strand, within PP_1287at 1472.618 kb on + strand, within PP_1287at 1472.663 kb on + strand, within PP_1287at 1472.664 kb on - strand, within PP_1287at 1472.664 kb on - strand, within PP_1287at 1472.724 kb on + strandat 1472.724 kb on + strandat 1472.768 kb on + strandat 1472.768 kb on + strandat 1472.769 kb on - strandat 1472.769 kb on - strandat 1472.905 kb on + strandat 1473.118 kb on + strand, within PP_1288at 1473.118 kb on + strand, within PP_1288at 1473.118 kb on + strand, within PP_1288at 1473.166 kb on + strand, within PP_1288at 1473.166 kb on + strand, within PP_1288at 1473.167 kb on - strand, within PP_1288at 1473.167 kb on - strandat 1473.167 kb on - strand, within PP_1288at 1473.167 kb on - strand, within PP_1288at 1473.402 kb on + strand, within PP_1288at 1473.451 kb on + strand, within PP_1288at 1473.451 kb on + strand, within PP_1288at 1473.451 kb on + strand, within PP_1288at 1473.451 kb on + strand, within PP_1288at 1473.452 kb on - strand, within PP_1288at 1473.452 kb on - strand, within PP_1288at 1473.452 kb on - strand, within PP_1288at 1473.452 kb on - strand, within PP_1288at 1473.454 kb on + strand, within PP_1288at 1473.589 kb on + strand, within PP_1288at 1473.589 kb on + strand, within PP_1288at 1473.589 kb on + strand, within PP_1288at 1473.590 kb on - strand, within PP_1288at 1473.590 kb on - strand, within PP_1288at 1473.590 kb on - strand, within PP_1288at 1473.590 kb on - strand, within PP_1288at 1473.650 kb on - strand, within PP_1288at 1473.650 kb on - strand, within PP_1288at 1473.718 kb on + strand, within PP_1288at 1473.718 kb on + strand, within PP_1288at 1473.718 kb on + strand, within PP_1288at 1473.718 kb on + strand, within PP_1288at 1473.846 kb on + strand, within PP_1288at 1473.847 kb on - strand, within PP_1288at 1473.928 kb on + strand, within PP_1288at 1473.929 kb on - strand, within PP_1288at 1473.929 kb on - strand, within PP_1288at 1474.481 kb on + strandat 1474.516 kb on - strandat 1474.616 kb on + strandat 1474.617 kb on - strandat 1474.637 kb on + strandat 1474.638 kb on - strandat 1474.638 kb on - strandat 1474.661 kb on + strandat 1474.661 kb on + strandat 1474.728 kb on + strandat 1474.785 kb on - strandat 1474.793 kb on + strandat 1474.793 kb on + strandat 1474.870 kb on - strandat 1475.082 kb on + strandat 1475.082 kb on + strandat 1475.082 kb on + strandat 1475.082 kb on + strandat 1475.082 kb on + strandat 1475.082 kb on + strandat 1475.082 kb on + strandat 1475.082 kb on + strandat 1475.082 kb on + strandat 1475.082 kb on + strandat 1475.082 kb on + strandat 1475.082 kb on + strandat 1475.082 kb on + strandat 1475.083 kb on - strandat 1475.083 kb on - strandat 1475.083 kb on - strandat 1475.083 kb on - strandat 1475.083 kb on - strandat 1475.083 kb on - strandat 1475.083 kb on - strandat 1475.085 kb on + strandat 1475.085 kb on + strandat 1475.085 kb on + strandat 1475.085 kb on + strandat 1475.085 kb on + strandat 1475.085 kb on + strandat 1475.086 kb on - strandat 1475.086 kb on - strandat 1475.086 kb on - strandat 1475.086 kb on - strandat 1475.086 kb on - strandat 1475.086 kb on - strandat 1475.086 kb on - strandat 1475.088 kb on + strandat 1475.181 kb on + strand, within PP_1289at 1475.199 kb on + strand, within PP_1289

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 30C; with MOPS
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1,472,188 + PP_1287 0.57 -3.4
1,472,390 + PP_1287 0.71 -2.5
1,472,498 + PP_1287 0.78 +0.2
1,472,499 - PP_1287 0.78 +0.2
1,472,499 - PP_1287 0.78 -1.5
1,472,499 - PP_1287 0.78 +2.2
1,472,526 + PP_1287 0.80 -0.3
1,472,549 + PP_1287 0.81 +0.3
1,472,549 + PP_1287 0.81 +0.6
1,472,550 - PP_1287 0.81 +1.8
1,472,575 - PP_1287 0.83 -2.3
1,472,603 + PP_1287 0.85 +0.3
1,472,603 + PP_1287 0.85 -3.7
1,472,610 - PP_1287 0.85 -0.3
1,472,618 + PP_1287 0.86 -1.5
1,472,663 + PP_1287 0.89 +1.1
1,472,664 - PP_1287 0.89 -1.3
1,472,664 - PP_1287 0.89 +1.3
1,472,724 + +1.2
1,472,724 + +0.0
1,472,768 + +0.6
1,472,768 + -2.3
1,472,769 - +1.6
1,472,769 - -0.1
1,472,905 + +1.7
1,473,118 + PP_1288 0.16 +2.0
1,473,118 + PP_1288 0.16 -0.1
1,473,118 + PP_1288 0.16 +0.2
1,473,166 + PP_1288 0.20 -1.8
1,473,166 + PP_1288 0.20 -4.6
1,473,167 - PP_1288 0.20 -3.3
1,473,167 - -0.2
1,473,167 - PP_1288 0.20 -1.0
1,473,167 - PP_1288 0.20 +0.7
1,473,402 + PP_1288 0.38 -1.7
1,473,451 + PP_1288 0.42 +0.0
1,473,451 + PP_1288 0.42 +0.6
1,473,451 + PP_1288 0.42 -3.6
1,473,451 + PP_1288 0.42 -1.0
1,473,452 - PP_1288 0.42 -0.3
1,473,452 - PP_1288 0.42 +0.5
1,473,452 - PP_1288 0.42 -2.7
1,473,452 - PP_1288 0.42 -0.2
1,473,454 + PP_1288 0.42 -1.1
1,473,589 + PP_1288 0.52 +0.4
1,473,589 + PP_1288 0.52 -0.9
1,473,589 + PP_1288 0.52 +0.0
1,473,590 - PP_1288 0.52 -0.9
1,473,590 - PP_1288 0.52 -2.5
1,473,590 - PP_1288 0.52 -0.5
1,473,590 - PP_1288 0.52 -4.3
1,473,650 - PP_1288 0.57 +0.4
1,473,650 - PP_1288 0.57 -4.8
1,473,718 + PP_1288 0.62 -2.5
1,473,718 + PP_1288 0.62 +0.4
1,473,718 + PP_1288 0.62 +1.4
1,473,718 + PP_1288 0.62 -0.2
1,473,846 + PP_1288 0.72 +0.0
1,473,847 - PP_1288 0.72 -3.3
1,473,928 + PP_1288 0.78 -0.2
1,473,929 - PP_1288 0.78 -1.5
1,473,929 - PP_1288 0.78 +0.7
1,474,481 + +0.8
1,474,516 - -0.3
1,474,616 + +0.4
1,474,617 - +1.0
1,474,637 + -0.8
1,474,638 - +0.5
1,474,638 - -1.9
1,474,661 + -0.2
1,474,661 + +0.6
1,474,728 + +1.2
1,474,785 - +0.0
1,474,793 + -2.7
1,474,793 + -1.0
1,474,870 - +2.2
1,475,082 + +0.6
1,475,082 + +0.9
1,475,082 + +0.6
1,475,082 + -1.2
1,475,082 + +0.7
1,475,082 + +0.0
1,475,082 + +0.5
1,475,082 + +0.2
1,475,082 + +2.5
1,475,082 + -3.7
1,475,082 + -1.2
1,475,082 + -3.8
1,475,082 + +0.3
1,475,083 - -0.9
1,475,083 - +0.7
1,475,083 - +0.2
1,475,083 - +0.4
1,475,083 - +0.7
1,475,083 - -1.1
1,475,083 - +0.4
1,475,085 + +0.7
1,475,085 + -3.0
1,475,085 + -0.2
1,475,085 + -0.0
1,475,085 + +0.5
1,475,085 + -0.7
1,475,086 - -0.5
1,475,086 - -2.1
1,475,086 - -2.5
1,475,086 - +0.6
1,475,086 - +0.3
1,475,086 - +1.1
1,475,086 - -3.5
1,475,088 + +0.1
1,475,181 + PP_1289 0.21 -0.0
1,475,199 + PP_1289 0.23 +1.0

Or see this region's nucleotide sequence