Strain Fitness in Pseudomonas simiae WCS417 around PS417_04930

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_04925 and PS417_04930 overlap by 4 nucleotidesPS417_04930 and PS417_04935 are separated by 17 nucleotides PS417_04925: PS417_04925 - MFS transporter, at 1,096,804 to 1,098,069 _04925 PS417_04930: PS417_04930 - hypothetical protein, at 1,098,066 to 1,098,704 _04930 PS417_04935: PS417_04935 - hypothetical protein, at 1,098,722 to 1,099,846 _04935 Position (kb) 1098 1099Strain fitness (log2 ratio) -2 -1 0 1 2at 1097.293 kb on + strand, within PS417_04925at 1097.294 kb on - strand, within PS417_04925at 1097.294 kb on - strand, within PS417_04925at 1097.521 kb on + strand, within PS417_04925at 1097.521 kb on + strand, within PS417_04925at 1097.521 kb on + strand, within PS417_04925at 1097.521 kb on + strand, within PS417_04925at 1097.521 kb on + strand, within PS417_04925at 1097.521 kb on + strand, within PS417_04925at 1097.522 kb on - strand, within PS417_04925at 1097.522 kb on - strand, within PS417_04925at 1097.522 kb on - strand, within PS417_04925at 1097.522 kb on - strand, within PS417_04925at 1097.522 kb on - strand, within PS417_04925at 1097.522 kb on - strand, within PS417_04925at 1097.548 kb on + strand, within PS417_04925at 1097.752 kb on + strand, within PS417_04925at 1097.753 kb on - strand, within PS417_04925at 1097.753 kb on - strand, within PS417_04925at 1098.041 kb on - strandat 1098.067 kb on + strandat 1098.073 kb on + strandat 1098.073 kb on + strandat 1098.074 kb on - strandat 1098.074 kb on - strandat 1098.074 kb on - strandat 1098.310 kb on + strand, within PS417_04930at 1098.409 kb on + strand, within PS417_04930at 1098.409 kb on + strand, within PS417_04930at 1098.410 kb on - strandat 1098.427 kb on + strand, within PS417_04930at 1098.679 kb on - strandat 1098.730 kb on - strandat 1098.821 kb on + strandat 1099.017 kb on + strand, within PS417_04935at 1099.017 kb on + strand, within PS417_04935at 1099.018 kb on - strand, within PS417_04935at 1099.020 kb on + strand, within PS417_04935

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
remove
1,097,293 + PS417_04925 0.39 +1.3
1,097,294 - PS417_04925 0.39 -1.9
1,097,294 - PS417_04925 0.39 -0.5
1,097,521 + PS417_04925 0.57 -2.6
1,097,521 + PS417_04925 0.57 -1.9
1,097,521 + PS417_04925 0.57 +0.0
1,097,521 + PS417_04925 0.57 -0.7
1,097,521 + PS417_04925 0.57 -2.2
1,097,521 + PS417_04925 0.57 +1.3
1,097,522 - PS417_04925 0.57 -0.8
1,097,522 - PS417_04925 0.57 +1.9
1,097,522 - PS417_04925 0.57 -0.7
1,097,522 - PS417_04925 0.57 -0.3
1,097,522 - PS417_04925 0.57 -1.7
1,097,522 - PS417_04925 0.57 +1.1
1,097,548 + PS417_04925 0.59 +1.0
1,097,752 + PS417_04925 0.75 +1.7
1,097,753 - PS417_04925 0.75 -0.4
1,097,753 - PS417_04925 0.75 +0.8
1,098,041 - +1.6
1,098,067 + +2.1
1,098,073 + +1.3
1,098,073 + -1.3
1,098,074 - -0.5
1,098,074 - +0.8
1,098,074 - -0.2
1,098,310 + PS417_04930 0.38 +1.7
1,098,409 + PS417_04930 0.54 +0.8
1,098,409 + PS417_04930 0.54 -0.1
1,098,410 - +1.5
1,098,427 + PS417_04930 0.56 +1.0
1,098,679 - +0.4
1,098,730 - +0.5
1,098,821 + +0.7
1,099,017 + PS417_04935 0.26 +0.7
1,099,017 + PS417_04935 0.26 +0.8
1,099,018 - PS417_04935 0.26 +0.2
1,099,020 + PS417_04935 0.26 -1.1

Or see this region's nucleotide sequence