Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03415 and PS417_03420 are separated by 180 nucleotides PS417_03420 and PS417_03430 are separated by 576 nucleotides
PS417_03415: PS417_03415 - isomerase, at 783,685 to 784,464
_03415
PS417_03420: PS417_03420 - hypothetical protein, at 784,645 to 788,943
_03420
PS417_03430: PS417_03430 - methyltransferase type 11, at 789,520 to 790,326
_03430
Position (kb) 784
785
786
787
788
789 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 783.710 kb on + strand at 783.711 kb on - strand at 783.846 kb on + strand, within PS417_03415 at 783.847 kb on - strand, within PS417_03415 at 784.028 kb on + strand, within PS417_03415 at 784.028 kb on + strand, within PS417_03415 at 784.028 kb on + strand, within PS417_03415 at 784.320 kb on - strand, within PS417_03415 at 784.452 kb on + strand at 784.481 kb on - strand at 784.481 kb on - strand at 784.499 kb on + strand at 784.500 kb on - strand at 784.500 kb on - strand at 784.608 kb on + strand at 784.608 kb on + strand at 784.609 kb on - strand at 784.638 kb on + strand at 784.744 kb on + strand at 784.867 kb on + strand at 784.868 kb on - strand at 784.868 kb on - strand at 784.902 kb on + strand at 784.903 kb on - strand at 785.239 kb on - strand, within PS417_03420 at 785.598 kb on - strand, within PS417_03420 at 785.821 kb on + strand, within PS417_03420 at 785.821 kb on + strand, within PS417_03420 at 785.821 kb on + strand, within PS417_03420 at 785.821 kb on + strand, within PS417_03420 at 785.821 kb on + strand, within PS417_03420 at 785.822 kb on - strand, within PS417_03420 at 785.822 kb on - strand, within PS417_03420 at 786.127 kb on + strand, within PS417_03420 at 786.136 kb on - strand, within PS417_03420 at 786.183 kb on + strand, within PS417_03420 at 786.264 kb on + strand, within PS417_03420 at 786.390 kb on + strand, within PS417_03420 at 786.589 kb on + strand, within PS417_03420 at 786.590 kb on - strand, within PS417_03420 at 786.590 kb on - strand, within PS417_03420 at 786.590 kb on - strand, within PS417_03420 at 786.860 kb on - strand, within PS417_03420 at 787.068 kb on + strand, within PS417_03420 at 787.204 kb on + strand, within PS417_03420 at 787.204 kb on + strand, within PS417_03420 at 787.205 kb on - strand, within PS417_03420 at 787.205 kb on - strand, within PS417_03420 at 787.329 kb on - strand, within PS417_03420 at 787.455 kb on + strand, within PS417_03420 at 787.467 kb on - strand, within PS417_03420 at 787.467 kb on - strand, within PS417_03420 at 787.470 kb on + strand, within PS417_03420 at 787.559 kb on + strand, within PS417_03420 at 787.560 kb on - strand, within PS417_03420 at 787.718 kb on - strand, within PS417_03420 at 787.755 kb on + strand at 787.755 kb on + strand, within PS417_03420 at 787.817 kb on - strand, within PS417_03420 at 787.856 kb on + strand, within PS417_03420 at 787.856 kb on + strand, within PS417_03420 at 787.857 kb on - strand, within PS417_03420 at 787.857 kb on - strand, within PS417_03420 at 788.195 kb on - strand, within PS417_03420 at 788.195 kb on - strand, within PS417_03420 at 788.448 kb on + strand, within PS417_03420 at 788.449 kb on - strand, within PS417_03420 at 788.704 kb on + strand at 788.704 kb on + strand at 788.704 kb on + strand at 788.705 kb on - strand at 788.705 kb on - strand at 788.815 kb on + strand at 788.947 kb on + strand at 788.947 kb on + strand at 789.058 kb on - strand at 789.058 kb on - strand at 789.138 kb on + strand at 789.199 kb on + strand at 789.199 kb on + strand at 789.631 kb on + strand, within PS417_03430 at 789.632 kb on - strand, within PS417_03430 at 789.669 kb on + strand, within PS417_03430 at 789.670 kb on - strand, within PS417_03430
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 783,710 + -1.9 783,711 - -1.4 783,846 + PS417_03415 0.21 +0.2 783,847 - PS417_03415 0.21 +1.0 784,028 + PS417_03415 0.44 -0.5 784,028 + PS417_03415 0.44 +1.1 784,028 + PS417_03415 0.44 +0.2 784,320 - PS417_03415 0.81 -3.6 784,452 + +0.3 784,481 - +1.5 784,481 - +0.4 784,499 + -2.5 784,500 - -0.5 784,500 - +0.2 784,608 + -0.4 784,608 + -0.3 784,609 - +1.2 784,638 + +0.1 784,744 + +0.2 784,867 + -0.9 784,868 - +0.3 784,868 - -0.1 784,902 + -1.2 784,903 - +0.9 785,239 - PS417_03420 0.14 -0.7 785,598 - PS417_03420 0.22 +0.9 785,821 + PS417_03420 0.27 -1.3 785,821 + PS417_03420 0.27 -0.9 785,821 + PS417_03420 0.27 -0.8 785,821 + PS417_03420 0.27 +0.5 785,821 + PS417_03420 0.27 +0.1 785,822 - PS417_03420 0.27 +0.8 785,822 - PS417_03420 0.27 +0.1 786,127 + PS417_03420 0.34 +0.0 786,136 - PS417_03420 0.35 -1.1 786,183 + PS417_03420 0.36 -0.4 786,264 + PS417_03420 0.38 +2.6 786,390 + PS417_03420 0.41 +0.5 786,589 + PS417_03420 0.45 -0.6 786,590 - PS417_03420 0.45 -0.0 786,590 - PS417_03420 0.45 +1.0 786,590 - PS417_03420 0.45 +2.0 786,860 - PS417_03420 0.52 +1.3 787,068 + PS417_03420 0.56 +2.3 787,204 + PS417_03420 0.60 -0.1 787,204 + PS417_03420 0.60 -0.4 787,205 - PS417_03420 0.60 +0.7 787,205 - PS417_03420 0.60 +2.1 787,329 - PS417_03420 0.62 +0.6 787,455 + PS417_03420 0.65 +1.2 787,467 - PS417_03420 0.66 -1.5 787,467 - PS417_03420 0.66 +0.1 787,470 + PS417_03420 0.66 -1.9 787,559 + PS417_03420 0.68 +0.3 787,560 - PS417_03420 0.68 -2.4 787,718 - PS417_03420 0.71 -0.9 787,755 + +1.1 787,755 + PS417_03420 0.72 +0.5 787,817 - PS417_03420 0.74 -0.7 787,856 + PS417_03420 0.75 +1.1 787,856 + PS417_03420 0.75 -0.4 787,857 - PS417_03420 0.75 +0.3 787,857 - PS417_03420 0.75 +1.7 788,195 - PS417_03420 0.83 -1.6 788,195 - PS417_03420 0.83 +0.8 788,448 + PS417_03420 0.88 -0.1 788,449 - PS417_03420 0.88 +0.9 788,704 + +1.1 788,704 + -0.2 788,704 + +0.5 788,705 - +0.6 788,705 - -1.9 788,815 + -0.2 788,947 + +0.1 788,947 + -3.0 789,058 - +0.7 789,058 - +2.0 789,138 + -0.7 789,199 + +0.5 789,199 + -1.0 789,631 + PS417_03430 0.14 -0.1 789,632 - PS417_03430 0.14 -0.8 789,669 + PS417_03430 0.18 +0.5 789,670 - PS417_03430 0.19 -0.6
Or see this region's nucleotide sequence