Strain Fitness in Pseudomonas simiae WCS417 around PS417_02960

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_02955 and PS417_02960 are separated by 30 nucleotidesPS417_02960 and PS417_02965 are separated by 279 nucleotides PS417_02955: PS417_02955 - hypothetical protein, at 675,462 to 676,676 _02955 PS417_02960: PS417_02960 - ribosomal protein L11 methyltransferase, at 676,707 to 677,585 _02960 PS417_02965: PS417_02965 - acetyl-CoA carboxylase, at 677,865 to 679,226 _02965 Position (kb) 676 677 678Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 675.877 kb on + strand, within PS417_02955at 675.878 kb on - strand, within PS417_02955at 676.708 kb on + strandat 676.911 kb on + strand, within PS417_02960at 676.912 kb on - strand, within PS417_02960at 676.948 kb on + strand, within PS417_02960at 676.949 kb on - strand, within PS417_02960at 677.534 kb on - strandat 677.534 kb on - strandat 677.534 kb on - strandat 677.534 kb on - strandat 677.788 kb on + strandat 677.867 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
remove
675,877 + PS417_02955 0.34 -2.8
675,878 - PS417_02955 0.34 -2.6
676,708 + -0.3
676,911 + PS417_02960 0.23 -3.3
676,912 - PS417_02960 0.23 +0.0
676,948 + PS417_02960 0.27 -1.4
676,949 - PS417_02960 0.28 -0.0
677,534 - -0.8
677,534 - -1.3
677,534 - +0.1
677,534 - -0.7
677,788 + -0.5
677,867 - +2.9

Or see this region's nucleotide sequence