Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26970 and PS417_26975 are separated by 78 nucleotides PS417_26975 and PS417_26980 are separated by 120 nucleotides PS417_26980 and PS417_26985 are separated by 104 nucleotides
PS417_26970: PS417_26970 - prolipoprotein diacylglyceryl transferase, at 5,825,179 to 5,825,991
_26970
PS417_26975: PS417_26975 - membrane protein, at 5,826,070 to 5,826,852
_26975
PS417_26980: PS417_26980 - hypothetical protein, at 5,826,973 to 5,827,719
_26980
PS417_26985: PS417_26985 - phosphoenolpyruvate-protein phosphotransferase, at 5,827,824 to 5,830,103
_26985
Position (kb) 5826
5827
5828 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 5826.006 kb on - strand at 5826.006 kb on - strand at 5826.006 kb on - strand at 5826.048 kb on - strand at 5826.059 kb on - strand at 5826.215 kb on + strand, within PS417_26975 at 5826.215 kb on + strand, within PS417_26975 at 5826.216 kb on - strand, within PS417_26975 at 5826.226 kb on + strand, within PS417_26975 at 5826.226 kb on + strand, within PS417_26975 at 5826.231 kb on + strand, within PS417_26975 at 5826.232 kb on - strand, within PS417_26975 at 5826.232 kb on - strand, within PS417_26975 at 5826.232 kb on - strand, within PS417_26975 at 5826.277 kb on + strand, within PS417_26975 at 5826.278 kb on - strand, within PS417_26975 at 5826.656 kb on - strand, within PS417_26975 at 5826.672 kb on + strand, within PS417_26975 at 5826.808 kb on + strand at 5826.836 kb on + strand at 5826.836 kb on + strand at 5826.837 kb on - strand at 5826.941 kb on - strand at 5827.048 kb on + strand, within PS417_26980 at 5827.100 kb on - strand, within PS417_26980 at 5827.265 kb on - strand, within PS417_26980 at 5827.297 kb on + strand, within PS417_26980 at 5827.345 kb on + strand, within PS417_26980 at 5827.345 kb on + strand, within PS417_26980 at 5827.345 kb on + strand at 5827.345 kb on + strand, within PS417_26980 at 5827.346 kb on - strand, within PS417_26980 at 5827.346 kb on - strand, within PS417_26980 at 5827.703 kb on + strand at 5827.704 kb on - strand at 5827.717 kb on + strand at 5827.736 kb on + strand at 5827.736 kb on + strand at 5828.164 kb on + strand, within PS417_26985 at 5828.323 kb on - strand, within PS417_26985 at 5828.470 kb on - strand, within PS417_26985 at 5828.591 kb on + strand, within PS417_26985 at 5828.591 kb on + strand, within PS417_26985
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,826,006 - +0.5 5,826,006 - +1.5 5,826,006 - +1.3 5,826,048 - -1.5 5,826,059 - -0.6 5,826,215 + PS417_26975 0.19 -1.1 5,826,215 + PS417_26975 0.19 -1.0 5,826,216 - PS417_26975 0.19 -1.7 5,826,226 + PS417_26975 0.20 -0.2 5,826,226 + PS417_26975 0.20 -2.5 5,826,231 + PS417_26975 0.21 +2.4 5,826,232 - PS417_26975 0.21 +0.3 5,826,232 - PS417_26975 0.21 -1.4 5,826,232 - PS417_26975 0.21 -1.5 5,826,277 + PS417_26975 0.26 +0.2 5,826,278 - PS417_26975 0.27 -0.5 5,826,656 - PS417_26975 0.75 -0.5 5,826,672 + PS417_26975 0.77 +0.4 5,826,808 + -1.0 5,826,836 + +0.5 5,826,836 + -3.5 5,826,837 - -0.9 5,826,941 - -0.2 5,827,048 + PS417_26980 0.10 +0.7 5,827,100 - PS417_26980 0.17 +1.2 5,827,265 - PS417_26980 0.39 +0.9 5,827,297 + PS417_26980 0.43 -0.3 5,827,345 + PS417_26980 0.50 +1.3 5,827,345 + PS417_26980 0.50 -1.1 5,827,345 + +1.1 5,827,345 + PS417_26980 0.50 +0.6 5,827,346 - PS417_26980 0.50 +0.1 5,827,346 - PS417_26980 0.50 +1.2 5,827,703 + +1.3 5,827,704 - -3.3 5,827,717 + +0.0 5,827,736 + +0.7 5,827,736 + +1.6 5,828,164 + PS417_26985 0.15 -0.2 5,828,323 - PS417_26985 0.22 -3.9 5,828,470 - PS417_26985 0.28 -4.1 5,828,591 + PS417_26985 0.34 -4.9 5,828,591 + PS417_26985 0.34 -4.1
Or see this region's nucleotide sequence