Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26750 and PS417_26755 overlap by 4 nucleotides PS417_26755 and PS417_26760 overlap by 4 nucleotides PS417_26760 and PS417_26765 are separated by 19 nucleotides PS417_26765 and PS417_26770 are separated by 144 nucleotides
PS417_26750: PS417_26750 - homoserine acetyltransferase, at 5,779,946 to 5,780,380
_26750
PS417_26755: PS417_26755 - nucleoside-triphosphate diphosphatase, at 5,780,377 to 5,780,973
_26755
PS417_26760: PS417_26760 - oxidase, at 5,780,970 to 5,782,172
_26760
PS417_26765: PS417_26765 - membrane protein, at 5,782,192 to 5,782,515
_26765
PS417_26770: PS417_26770 - tRNA (guanine-N7)-methyltransferase, at 5,782,660 to 5,783,385
_26770
Position (kb) 5780
5781
5782
5783 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5780.012 kb on - strand, within PS417_26750 at 5780.013 kb on + strand, within PS417_26750 at 5780.013 kb on + strand, within PS417_26750 at 5780.014 kb on - strand, within PS417_26750 at 5780.057 kb on + strand, within PS417_26750 at 5780.058 kb on - strand, within PS417_26750 at 5780.115 kb on + strand, within PS417_26750 at 5780.308 kb on + strand, within PS417_26750 at 5780.388 kb on + strand at 5780.400 kb on - strand at 5780.632 kb on + strand, within PS417_26755 at 5780.845 kb on + strand, within PS417_26755 at 5781.061 kb on - strand at 5781.147 kb on + strand, within PS417_26760 at 5781.147 kb on + strand, within PS417_26760 at 5781.148 kb on - strand, within PS417_26760 at 5781.148 kb on - strand, within PS417_26760 at 5781.738 kb on + strand, within PS417_26760 at 5781.845 kb on + strand, within PS417_26760 at 5781.900 kb on + strand, within PS417_26760 at 5782.088 kb on - strand at 5782.088 kb on - strand at 5782.180 kb on + strand at 5782.405 kb on + strand, within PS417_26765 at 5782.446 kb on + strand, within PS417_26765 at 5782.446 kb on + strand, within PS417_26765 at 5782.446 kb on + strand, within PS417_26765 at 5782.450 kb on + strand, within PS417_26765 at 5782.565 kb on - strand at 5782.565 kb on - strand at 5782.820 kb on + strand, within PS417_26770 at 5783.027 kb on + strand, within PS417_26770 at 5783.028 kb on - strand, within PS417_26770
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,780,012 - PS417_26750 0.15 -0.9 5,780,013 + PS417_26750 0.15 -1.0 5,780,013 + PS417_26750 0.15 -1.2 5,780,014 - PS417_26750 0.16 -2.0 5,780,057 + PS417_26750 0.26 -0.3 5,780,058 - PS417_26750 0.26 +0.3 5,780,115 + PS417_26750 0.39 -0.7 5,780,308 + PS417_26750 0.83 -3.0 5,780,388 + +1.3 5,780,400 - +0.3 5,780,632 + PS417_26755 0.43 -0.8 5,780,845 + PS417_26755 0.78 -0.8 5,781,061 - -1.8 5,781,147 + PS417_26760 0.15 -1.3 5,781,147 + PS417_26760 0.15 -2.3 5,781,148 - PS417_26760 0.15 -1.3 5,781,148 - PS417_26760 0.15 -0.1 5,781,738 + PS417_26760 0.64 +2.3 5,781,845 + PS417_26760 0.73 -2.3 5,781,900 + PS417_26760 0.77 -2.5 5,782,088 - +1.0 5,782,088 - -1.5 5,782,180 + -1.1 5,782,405 + PS417_26765 0.66 +0.3 5,782,446 + PS417_26765 0.78 +0.6 5,782,446 + PS417_26765 0.78 +0.9 5,782,446 + PS417_26765 0.78 -0.5 5,782,450 + PS417_26765 0.80 +0.8 5,782,565 - +0.0 5,782,565 - -1.0 5,782,820 + PS417_26770 0.22 -1.4 5,783,027 + PS417_26770 0.51 -0.3 5,783,028 - PS417_26770 0.51 -2.4
Or see this region's nucleotide sequence