Strain Fitness in Pseudomonas simiae WCS417 around PS417_26675

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_26665 and PS417_26670 are separated by 46 nucleotidesPS417_26670 and PS417_26675 are separated by 239 nucleotidesPS417_26675 and PS417_26680 are separated by 77 nucleotides PS417_26665: PS417_26665 - chemotaxis protein CheY, at 5,766,156 to 5,766,521 _26665 PS417_26670: PS417_26670 - pilus assembly protein PilG, at 5,766,568 to 5,766,975 _26670 PS417_26675: PS417_26675 - glutathione synthetase, at 5,767,215 to 5,768,168 _26675 PS417_26680: PS417_26680 - energy transducer TonB, at 5,768,246 to 5,769,151 _26680 Position (kb) 5767 5768 5769Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5766.535 kb on - strandat 5766.535 kb on - strandat 5766.538 kb on + strandat 5766.538 kb on + strandat 5766.538 kb on + strandat 5766.538 kb on + strandat 5766.538 kb on + strandat 5766.539 kb on - strandat 5766.539 kb on - strandat 5766.539 kb on - strandat 5766.539 kb on - strandat 5766.539 kb on - strandat 5766.539 kb on - strandat 5766.539 kb on - strandat 5766.606 kb on - strandat 5766.606 kb on - strandat 5767.017 kb on + strandat 5767.018 kb on - strandat 5767.018 kb on - strandat 5767.092 kb on - strandat 5767.184 kb on - strandat 5767.193 kb on - strandat 5768.169 kb on + strandat 5768.171 kb on + strandat 5768.171 kb on + strandat 5768.171 kb on + strandat 5768.171 kb on + strandat 5768.171 kb on + strandat 5768.172 kb on - strandat 5768.172 kb on - strandat 5768.172 kb on - strandat 5768.172 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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5,766,535 - -1.0
5,766,535 - -1.9
5,766,538 + -2.2
5,766,538 + -1.3
5,766,538 + -1.0
5,766,538 + -0.1
5,766,538 + -2.0
5,766,539 - +2.9
5,766,539 - +1.0
5,766,539 - -2.9
5,766,539 - +1.2
5,766,539 - -1.7
5,766,539 - +0.4
5,766,539 - -0.7
5,766,606 - -3.0
5,766,606 - +0.6
5,767,017 + +0.6
5,767,018 - -1.7
5,767,018 - -0.4
5,767,092 - +0.1
5,767,184 - -3.1
5,767,193 - -2.4
5,768,169 + -0.7
5,768,171 + -2.2
5,768,171 + +0.3
5,768,171 + -3.4
5,768,171 + +0.2
5,768,171 + +0.4
5,768,172 - +0.1
5,768,172 - -0.6
5,768,172 - +0.9
5,768,172 - +1.0

Or see this region's nucleotide sequence