Strain Fitness in Pseudomonas simiae WCS417 around PS417_26360

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_26355 and PS417_26360 are separated by 287 nucleotidesPS417_26360 and PS417_26365 are separated by 36 nucleotides PS417_26355: PS417_26355 - Zn-dependent protease, at 5,698,437 to 5,699,753 _26355 PS417_26360: PS417_26360 - MFS transporter, at 5,700,041 to 5,700,889 _26360 PS417_26365: PS417_26365 - EmrB/QacA subfamily drug resistance transporter, at 5,700,926 to 5,702,353 _26365 Position (kb) 5700 5701Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5699.196 kb on + strand, within PS417_26355at 5699.472 kb on + strand, within PS417_26355at 5699.472 kb on + strand, within PS417_26355at 5699.472 kb on + strand, within PS417_26355at 5699.472 kb on + strand, within PS417_26355at 5699.473 kb on - strand, within PS417_26355at 5699.491 kb on - strand, within PS417_26355at 5699.499 kb on + strand, within PS417_26355at 5699.499 kb on + strand, within PS417_26355at 5699.499 kb on + strand, within PS417_26355at 5699.613 kb on + strand, within PS417_26355at 5699.682 kb on + strandat 5699.683 kb on - strandat 5699.683 kb on - strandat 5699.761 kb on + strandat 5699.762 kb on - strandat 5699.814 kb on + strandat 5699.815 kb on - strandat 5699.898 kb on + strandat 5699.898 kb on + strandat 5699.961 kb on + strandat 5699.962 kb on - strandat 5699.962 kb on - strandat 5699.963 kb on + strandat 5699.964 kb on - strandat 5699.995 kb on + strandat 5699.995 kb on + strandat 5699.995 kb on + strandat 5699.995 kb on + strandat 5699.996 kb on - strandat 5699.996 kb on - strandat 5699.996 kb on - strandat 5699.998 kb on + strandat 5699.998 kb on + strandat 5699.998 kb on + strandat 5699.998 kb on + strandat 5699.999 kb on - strandat 5699.999 kb on - strandat 5699.999 kb on - strandat 5700.083 kb on + strandat 5700.083 kb on + strandat 5700.084 kb on - strandat 5700.185 kb on - strand, within PS417_26360at 5700.185 kb on - strand, within PS417_26360at 5700.358 kb on + strand, within PS417_26360at 5700.359 kb on - strand, within PS417_26360at 5700.455 kb on + strand, within PS417_26360at 5700.455 kb on + strand, within PS417_26360at 5700.536 kb on + strand, within PS417_26360at 5700.536 kb on + strand, within PS417_26360at 5700.536 kb on + strand, within PS417_26360at 5700.537 kb on - strand, within PS417_26360at 5700.537 kb on - strand, within PS417_26360at 5700.537 kb on - strand, within PS417_26360at 5700.653 kb on + strand, within PS417_26360at 5700.717 kb on - strand, within PS417_26360at 5700.753 kb on - strand, within PS417_26360at 5700.753 kb on - strand, within PS417_26360at 5700.753 kb on - strand, within PS417_26360at 5700.753 kb on - strand, within PS417_26360at 5700.753 kb on - strand, within PS417_26360at 5700.901 kb on + strandat 5700.901 kb on + strandat 5700.902 kb on - strandat 5701.098 kb on - strand, within PS417_26365at 5701.416 kb on - strand, within PS417_26365

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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5,699,196 + PS417_26355 0.58 -2.6
5,699,472 + PS417_26355 0.79 -0.1
5,699,472 + PS417_26355 0.79 +1.6
5,699,472 + PS417_26355 0.79 -0.3
5,699,472 + PS417_26355 0.79 +0.3
5,699,473 - PS417_26355 0.79 -0.2
5,699,491 - PS417_26355 0.80 -0.3
5,699,499 + PS417_26355 0.81 -0.9
5,699,499 + PS417_26355 0.81 +0.3
5,699,499 + PS417_26355 0.81 +0.2
5,699,613 + PS417_26355 0.89 -1.7
5,699,682 + -0.1
5,699,683 - -1.0
5,699,683 - -0.9
5,699,761 + +1.0
5,699,762 - -1.0
5,699,814 + +1.9
5,699,815 - -1.7
5,699,898 + -0.3
5,699,898 + +1.1
5,699,961 + +0.6
5,699,962 - +0.5
5,699,962 - +0.3
5,699,963 + -0.8
5,699,964 - +0.9
5,699,995 + +0.3
5,699,995 + -1.3
5,699,995 + +0.7
5,699,995 + -0.6
5,699,996 - +0.1
5,699,996 - +0.5
5,699,996 - +2.2
5,699,998 + -0.1
5,699,998 + -2.7
5,699,998 + -2.9
5,699,998 + -0.4
5,699,999 - -1.1
5,699,999 - -2.3
5,699,999 - -1.5
5,700,083 + -0.5
5,700,083 + +0.2
5,700,084 - +1.0
5,700,185 - PS417_26360 0.17 +3.4
5,700,185 - PS417_26360 0.17 +0.4
5,700,358 + PS417_26360 0.37 +0.1
5,700,359 - PS417_26360 0.37 +0.3
5,700,455 + PS417_26360 0.49 +1.3
5,700,455 + PS417_26360 0.49 -0.3
5,700,536 + PS417_26360 0.58 -1.9
5,700,536 + PS417_26360 0.58 +0.5
5,700,536 + PS417_26360 0.58 +3.3
5,700,537 - PS417_26360 0.58 +0.9
5,700,537 - PS417_26360 0.58 +0.4
5,700,537 - PS417_26360 0.58 +0.1
5,700,653 + PS417_26360 0.72 +1.6
5,700,717 - PS417_26360 0.80 -0.5
5,700,753 - PS417_26360 0.84 +0.6
5,700,753 - PS417_26360 0.84 -1.2
5,700,753 - PS417_26360 0.84 +1.1
5,700,753 - PS417_26360 0.84 +0.4
5,700,753 - PS417_26360 0.84 -0.4
5,700,901 + +0.3
5,700,901 + -0.6
5,700,902 - +0.9
5,701,098 - PS417_26365 0.12 -0.6
5,701,416 - PS417_26365 0.34 +0.0

Or see this region's nucleotide sequence