Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26345 and PS417_26350 are separated by 180 nucleotides PS417_26350 and PS417_26355 overlap by 1 nucleotides
PS417_26345: PS417_26345 - choline dehydrogenase, at 5,695,111 to 5,696,814
_26345
PS417_26350: PS417_26350 - peptidase C69, at 5,696,995 to 5,698,437
_26350
PS417_26355: PS417_26355 - Zn-dependent protease, at 5,698,437 to 5,699,753
_26355
Position (kb) 5696
5697
5698
5699 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5696.024 kb on - strand, within PS417_26345 at 5696.077 kb on + strand, within PS417_26345 at 5696.228 kb on - strand, within PS417_26345 at 5696.228 kb on - strand, within PS417_26345 at 5696.356 kb on + strand, within PS417_26345 at 5696.356 kb on + strand, within PS417_26345 at 5696.356 kb on + strand, within PS417_26345 at 5696.357 kb on - strand, within PS417_26345 at 5696.357 kb on - strand, within PS417_26345 at 5696.469 kb on + strand, within PS417_26345 at 5696.749 kb on + strand at 5696.749 kb on + strand at 5696.750 kb on - strand at 5696.812 kb on + strand at 5697.074 kb on + strand at 5697.074 kb on + strand at 5697.091 kb on + strand at 5697.319 kb on + strand, within PS417_26350 at 5697.368 kb on - strand, within PS417_26350 at 5697.509 kb on + strand, within PS417_26350 at 5697.509 kb on + strand, within PS417_26350 at 5697.626 kb on + strand, within PS417_26350 at 5697.796 kb on + strand, within PS417_26350 at 5698.259 kb on - strand at 5698.400 kb on + strand at 5698.401 kb on - strand at 5698.418 kb on + strand at 5698.418 kb on + strand at 5698.418 kb on + strand at 5698.419 kb on - strand at 5698.555 kb on + strand at 5698.555 kb on + strand at 5698.851 kb on + strand at 5698.851 kb on + strand, within PS417_26355 at 5698.920 kb on - strand, within PS417_26355 at 5698.920 kb on - strand, within PS417_26355 at 5699.196 kb on + strand, within PS417_26355
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,696,024 - PS417_26345 0.54 -0.3 5,696,077 + PS417_26345 0.57 -1.4 5,696,228 - PS417_26345 0.66 +1.0 5,696,228 - PS417_26345 0.66 +0.1 5,696,356 + PS417_26345 0.73 +1.8 5,696,356 + PS417_26345 0.73 +0.5 5,696,356 + PS417_26345 0.73 -0.6 5,696,357 - PS417_26345 0.73 +0.4 5,696,357 - PS417_26345 0.73 +1.6 5,696,469 + PS417_26345 0.80 -2.3 5,696,749 + -0.4 5,696,749 + +0.2 5,696,750 - -2.5 5,696,812 + -1.5 5,697,074 + +0.2 5,697,074 + -0.4 5,697,091 + -0.6 5,697,319 + PS417_26350 0.22 +0.4 5,697,368 - PS417_26350 0.26 +1.8 5,697,509 + PS417_26350 0.36 -0.0 5,697,509 + PS417_26350 0.36 +0.4 5,697,626 + PS417_26350 0.44 +0.1 5,697,796 + PS417_26350 0.56 +1.9 5,698,259 - -1.1 5,698,400 + -1.9 5,698,401 - +3.2 5,698,418 + +0.4 5,698,418 + -2.4 5,698,418 + +0.7 5,698,419 - -0.3 5,698,555 + -0.1 5,698,555 + +0.7 5,698,851 + -0.8 5,698,851 + PS417_26355 0.31 +0.0 5,698,920 - PS417_26355 0.37 -2.1 5,698,920 - PS417_26355 0.37 -1.7 5,699,196 + PS417_26355 0.58 -2.6
Or see this region's nucleotide sequence