Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02465 and PS417_02470 overlap by 13 nucleotides PS417_02470 and PS417_02475 are separated by 15 nucleotides PS417_02475 and PS417_02480 overlap by 1 nucleotides
PS417_02465: PS417_02465 - carbohydrate kinase, at 563,744 to 564,604
_02465
PS417_02470: PS417_02470 - ATPase, at 564,592 to 565,062
_02470
PS417_02475: PS417_02475 - N-acetylmuramoyl-L-alanine amidase, at 565,078 to 566,499
_02475
PS417_02480: PS417_02480 - DNA mismatch repair protein, at 566,499 to 568,415
_02480
Position (kb) 565
566
567 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 564.275 kb on - strand, within PS417_02465 at 564.465 kb on - strand, within PS417_02465 at 564.555 kb on + strand at 564.602 kb on + strand at 566.296 kb on + strand, within PS417_02475 at 566.296 kb on + strand, within PS417_02475 at 566.296 kb on + strand at 566.297 kb on - strand, within PS417_02475 at 566.297 kb on - strand, within PS417_02475 at 566.297 kb on - strand, within PS417_02475 at 566.297 kb on - strand, within PS417_02475 at 566.409 kb on + strand at 567.285 kb on + strand, within PS417_02480 at 567.285 kb on + strand, within PS417_02480
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 564,275 - PS417_02465 0.62 +0.0 564,465 - PS417_02465 0.84 +1.1 564,555 + +0.7 564,602 + -2.9 566,296 + PS417_02475 0.86 +0.1 566,296 + PS417_02475 0.86 -2.9 566,296 + +2.1 566,297 - PS417_02475 0.86 -2.4 566,297 - PS417_02475 0.86 -0.2 566,297 - PS417_02475 0.86 -2.7 566,297 - PS417_02475 0.86 -3.2 566,409 + -2.4 567,285 + PS417_02480 0.41 -2.1 567,285 + PS417_02480 0.41 +2.6
Or see this region's nucleotide sequence