Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24180 and PS417_24185 are separated by 880 nucleotides PS417_24185 and PS417_24190 are separated by 201 nucleotides
PS417_24180: PS417_24180 - hypothetical protein, at 5,243,762 to 5,245,837
_24180
PS417_24185: PS417_24185 - hypothetical protein, at 5,246,718 to 5,246,987
_24185
PS417_24190: PS417_24190 - AraC family transcriptional regulator, at 5,247,189 to 5,248,043
_24190
Position (kb) 5246
5247 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5245.733 kb on + strand at 5245.734 kb on - strand at 5245.763 kb on + strand at 5245.763 kb on + strand at 5245.884 kb on - strand at 5245.889 kb on - strand at 5245.932 kb on + strand at 5246.033 kb on + strand at 5246.079 kb on + strand at 5246.096 kb on + strand at 5246.149 kb on + strand at 5246.166 kb on + strand at 5246.178 kb on + strand at 5246.179 kb on - strand at 5246.179 kb on - strand at 5246.277 kb on + strand at 5246.388 kb on + strand at 5246.394 kb on + strand at 5246.416 kb on + strand at 5246.416 kb on + strand at 5246.416 kb on + strand at 5246.416 kb on + strand at 5246.416 kb on + strand at 5246.417 kb on - strand at 5246.417 kb on - strand at 5246.417 kb on - strand at 5246.417 kb on - strand at 5246.417 kb on - strand at 5246.417 kb on - strand at 5246.417 kb on - strand at 5246.417 kb on - strand at 5246.518 kb on + strand at 5246.519 kb on - strand at 5246.543 kb on + strand at 5246.583 kb on + strand at 5246.583 kb on + strand at 5246.583 kb on + strand at 5246.601 kb on + strand at 5246.601 kb on + strand at 5246.668 kb on - strand at 5246.678 kb on + strand at 5246.678 kb on + strand at 5246.678 kb on + strand at 5246.679 kb on - strand at 5246.704 kb on + strand at 5246.704 kb on + strand at 5246.705 kb on - strand at 5246.705 kb on - strand at 5246.792 kb on + strand, within PS417_24185 at 5246.793 kb on - strand, within PS417_24185 at 5246.793 kb on - strand, within PS417_24185 at 5246.808 kb on + strand, within PS417_24185 at 5246.808 kb on + strand, within PS417_24185 at 5247.078 kb on - strand at 5247.274 kb on + strand at 5247.275 kb on - strand, within PS417_24190 at 5247.332 kb on - strand, within PS417_24190 at 5247.361 kb on - strand, within PS417_24190 at 5247.361 kb on - strand, within PS417_24190 at 5247.425 kb on - strand, within PS417_24190 at 5247.455 kb on - strand, within PS417_24190 at 5247.488 kb on + strand, within PS417_24190 at 5247.489 kb on - strand, within PS417_24190 at 5247.489 kb on - strand, within PS417_24190 at 5247.492 kb on + strand, within PS417_24190 at 5247.492 kb on + strand, within PS417_24190 at 5247.493 kb on - strand, within PS417_24190 at 5247.493 kb on - strand, within PS417_24190 at 5247.625 kb on + strand, within PS417_24190 at 5247.675 kb on + strand, within PS417_24190 at 5247.676 kb on - strand, within PS417_24190 at 5247.676 kb on - strand, within PS417_24190 at 5247.786 kb on - strand, within PS417_24190 at 5247.940 kb on + strand, within PS417_24190 at 5247.941 kb on - strand, within PS417_24190 at 5247.941 kb on - strand, within PS417_24190 at 5247.941 kb on - strand, within PS417_24190 at 5247.941 kb on - strand, within PS417_24190 at 5247.941 kb on - strand, within PS417_24190 at 5247.941 kb on - strand, within PS417_24190 at 5247.941 kb on - strand, within PS417_24190
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,245,733 + -3.2 5,245,734 - -0.4 5,245,763 + -0.3 5,245,763 + -0.0 5,245,884 - -4.0 5,245,889 - +1.3 5,245,932 + +0.1 5,246,033 + +2.8 5,246,079 + -0.3 5,246,096 + +0.6 5,246,149 + +0.6 5,246,166 + +0.5 5,246,178 + +0.6 5,246,179 - +0.3 5,246,179 - -1.6 5,246,277 + +0.4 5,246,388 + +0.5 5,246,394 + +0.4 5,246,416 + +1.9 5,246,416 + +0.3 5,246,416 + +1.8 5,246,416 + +1.0 5,246,416 + +2.6 5,246,417 - +1.7 5,246,417 - +2.0 5,246,417 - -1.5 5,246,417 - +1.0 5,246,417 - -1.1 5,246,417 - -0.2 5,246,417 - +1.2 5,246,417 - -0.9 5,246,518 + +0.7 5,246,519 - -1.1 5,246,543 + +0.2 5,246,583 + +0.9 5,246,583 + +0.2 5,246,583 + -0.2 5,246,601 + -1.3 5,246,601 + +0.0 5,246,668 - -1.3 5,246,678 + +0.0 5,246,678 + -0.8 5,246,678 + -1.7 5,246,679 - +2.5 5,246,704 + -0.2 5,246,704 + -0.5 5,246,705 - -0.1 5,246,705 - -1.6 5,246,792 + PS417_24185 0.27 -0.1 5,246,793 - PS417_24185 0.28 +3.4 5,246,793 - PS417_24185 0.28 +0.4 5,246,808 + PS417_24185 0.33 -1.4 5,246,808 + PS417_24185 0.33 -0.3 5,247,078 - +0.1 5,247,274 + -1.0 5,247,275 - PS417_24190 0.10 -0.2 5,247,332 - PS417_24190 0.17 -3.0 5,247,361 - PS417_24190 0.20 -0.1 5,247,361 - PS417_24190 0.20 -0.7 5,247,425 - PS417_24190 0.28 +0.9 5,247,455 - PS417_24190 0.31 +0.4 5,247,488 + PS417_24190 0.35 -0.4 5,247,489 - PS417_24190 0.35 -0.3 5,247,489 - PS417_24190 0.35 +0.1 5,247,492 + PS417_24190 0.35 +1.1 5,247,492 + PS417_24190 0.35 +1.8 5,247,493 - PS417_24190 0.36 -0.1 5,247,493 - PS417_24190 0.36 +1.4 5,247,625 + PS417_24190 0.51 +0.7 5,247,675 + PS417_24190 0.57 -0.2 5,247,676 - PS417_24190 0.57 -1.6 5,247,676 - PS417_24190 0.57 -0.1 5,247,786 - PS417_24190 0.70 -0.1 5,247,940 + PS417_24190 0.88 +0.3 5,247,941 - PS417_24190 0.88 +0.3 5,247,941 - PS417_24190 0.88 -0.6 5,247,941 - PS417_24190 0.88 -0.0 5,247,941 - PS417_24190 0.88 -0.0 5,247,941 - PS417_24190 0.88 +2.0 5,247,941 - PS417_24190 0.88 +0.0 5,247,941 - PS417_24190 0.88 +0.5
Or see this region's nucleotide sequence