Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21715 and PS417_21720 are separated by 14 nucleotides PS417_21720 and PS417_21725 are separated by 246 nucleotides
PS417_21715: PS417_21715 - hypothetical protein, at 4,711,048 to 4,716,966
_21715
PS417_21720: PS417_21720 - AraC family transcriptional regulator, at 4,716,981 to 4,717,961
_21720
PS417_21725: PS417_21725 - amino acid transporter, at 4,718,208 to 4,718,972
_21725
Position (kb)
4716
4717
4718 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4716.110 kb on - strand, within PS417_21715 at 4716.131 kb on + strand, within PS417_21715 at 4716.131 kb on + strand, within PS417_21715 at 4716.132 kb on - strand, within PS417_21715 at 4716.307 kb on - strand, within PS417_21715 at 4716.386 kb on + strand at 4716.387 kb on - strand at 4716.595 kb on + strand at 4716.667 kb on + strand at 4716.862 kb on + strand at 4716.863 kb on - strand at 4716.863 kb on - strand at 4716.863 kb on - strand at 4716.865 kb on + strand at 4716.866 kb on - strand at 4716.866 kb on - strand at 4716.964 kb on + strand at 4716.965 kb on - strand at 4716.965 kb on - strand at 4716.965 kb on - strand at 4717.983 kb on - strand at 4717.988 kb on - strand at 4718.094 kb on - strand at 4718.101 kb on + strand at 4718.181 kb on + strand at 4718.182 kb on - strand at 4718.182 kb on - strand at 4718.209 kb on + strand at 4718.525 kb on + strand, within PS417_21725 at 4718.525 kb on + strand, within PS417_21725 at 4718.526 kb on - strand, within PS417_21725 at 4718.526 kb on - strand, within PS417_21725 at 4718.526 kb on - strand, within PS417_21725 at 4718.546 kb on + strand, within PS417_21725 at 4718.547 kb on - strand, within PS417_21725 at 4718.942 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,716,110 - PS417_21715 0.86 +1.1 4,716,131 + PS417_21715 0.86 -0.5 4,716,131 + PS417_21715 0.86 +0.4 4,716,132 - PS417_21715 0.86 -0.4 4,716,307 - PS417_21715 0.89 +2.8 4,716,386 + +0.1 4,716,387 - +2.3 4,716,595 + -1.8 4,716,667 + +0.6 4,716,862 + +0.1 4,716,863 - +1.4 4,716,863 - -0.1 4,716,863 - -0.1 4,716,865 + -1.1 4,716,866 - -3.0 4,716,866 - -1.3 4,716,964 + -0.5 4,716,965 - +0.2 4,716,965 - +0.5 4,716,965 - +1.1 4,717,983 - -0.2 4,717,988 - +1.3 4,718,094 - -1.6 4,718,101 + -2.0 4,718,181 + -1.5 4,718,182 - -1.0 4,718,182 - +0.4 4,718,209 + -1.1 4,718,525 + PS417_21725 0.41 -0.6 4,718,525 + PS417_21725 0.41 -0.4 4,718,526 - PS417_21725 0.42 +0.4 4,718,526 - PS417_21725 0.42 -3.2 4,718,526 - PS417_21725 0.42 +1.5 4,718,546 + PS417_21725 0.44 -1.0 4,718,547 - PS417_21725 0.44 -0.2 4,718,942 + -1.4
Or see this region's nucleotide sequence