Strain Fitness in Pseudomonas simiae WCS417 around PS417_21230

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_21220 and PS417_21230 are separated by 646 nucleotidesPS417_21230 and PS417_21235 are separated by 132 nucleotidesPS417_21235 and PS417_21240 overlap by 4 nucleotides PS417_21220: PS417_21220 - acetyl-CoA acetyltransferase, at 4,615,096 to 4,616,301 _21220 PS417_21230: PS417_21230 - cytochrome C, at 4,616,948 to 4,617,751 _21230 PS417_21235: PS417_21235 - transglutaminase, at 4,617,884 to 4,618,687 _21235 PS417_21240: PS417_21240 - hypothetical protein, at 4,618,684 to 4,619,634 _21240 Position (kb) 4616 4617 4618Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4616.340 kb on - strandat 4616.417 kb on + strandat 4616.417 kb on + strandat 4616.423 kb on - strandat 4616.423 kb on - strandat 4616.558 kb on - strandat 4616.558 kb on - strandat 4616.711 kb on + strandat 4616.727 kb on + strandat 4616.728 kb on - strandat 4616.728 kb on - strandat 4616.728 kb on - strandat 4616.728 kb on - strandat 4616.800 kb on + strandat 4616.801 kb on - strandat 4616.801 kb on - strandat 4617.118 kb on + strand, within PS417_21230at 4617.119 kb on - strand, within PS417_21230at 4617.119 kb on - strand, within PS417_21230at 4617.329 kb on + strand, within PS417_21230at 4617.329 kb on + strand, within PS417_21230at 4617.330 kb on - strand, within PS417_21230at 4617.572 kb on + strand, within PS417_21230at 4617.614 kb on + strand, within PS417_21230at 4617.615 kb on - strand, within PS417_21230at 4617.615 kb on - strandat 4617.615 kb on - strand, within PS417_21230at 4617.716 kb on + strandat 4617.717 kb on - strandat 4617.749 kb on + strandat 4617.750 kb on - strandat 4617.833 kb on - strandat 4617.993 kb on + strand, within PS417_21235at 4618.062 kb on + strand, within PS417_21235at 4618.063 kb on - strand, within PS417_21235at 4618.129 kb on - strand, within PS417_21235at 4618.146 kb on + strand, within PS417_21235at 4618.272 kb on + strand, within PS417_21235at 4618.273 kb on - strand, within PS417_21235at 4618.621 kb on - strandat 4618.621 kb on - strandat 4618.656 kb on + strandat 4618.656 kb on + strandat 4618.657 kb on - strandat 4618.709 kb on + strandat 4618.709 kb on + strandat 4618.709 kb on + strandat 4618.709 kb on + strandat 4618.709 kb on + strandat 4618.709 kb on + strandat 4618.710 kb on - strandat 4618.710 kb on - strandat 4618.710 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
remove
4,616,340 - -2.0
4,616,417 + +1.9
4,616,417 + -0.5
4,616,423 - -1.1
4,616,423 - -1.1
4,616,558 - -1.0
4,616,558 - +0.2
4,616,711 + +0.4
4,616,727 + -1.0
4,616,728 - -1.0
4,616,728 - -0.3
4,616,728 - -0.8
4,616,728 - +3.3
4,616,800 + +1.7
4,616,801 - -0.8
4,616,801 - -1.0
4,617,118 + PS417_21230 0.21 +1.8
4,617,119 - PS417_21230 0.21 +1.0
4,617,119 - PS417_21230 0.21 +0.5
4,617,329 + PS417_21230 0.47 +0.6
4,617,329 + PS417_21230 0.47 -0.3
4,617,330 - PS417_21230 0.48 +0.8
4,617,572 + PS417_21230 0.78 -0.4
4,617,614 + PS417_21230 0.83 -1.4
4,617,615 - PS417_21230 0.83 +1.6
4,617,615 - +0.4
4,617,615 - PS417_21230 0.83 -1.8
4,617,716 + -1.0
4,617,717 - -1.0
4,617,749 + -0.1
4,617,750 - -0.8
4,617,833 - +0.8
4,617,993 + PS417_21235 0.14 +0.6
4,618,062 + PS417_21235 0.22 -2.3
4,618,063 - PS417_21235 0.22 +0.6
4,618,129 - PS417_21235 0.30 -2.8
4,618,146 + PS417_21235 0.33 +0.0
4,618,272 + PS417_21235 0.48 +0.7
4,618,273 - PS417_21235 0.48 -0.4
4,618,621 - +0.6
4,618,621 - +1.0
4,618,656 + +0.5
4,618,656 + +0.3
4,618,657 - -1.0
4,618,709 + -2.3
4,618,709 + -0.8
4,618,709 + +0.9
4,618,709 + -1.2
4,618,709 + +0.9
4,618,709 + +1.2
4,618,710 - +1.0
4,618,710 - -0.6
4,618,710 - -0.1

Or see this region's nucleotide sequence