Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21220 and PS417_21230 are separated by 646 nucleotides PS417_21230 and PS417_21235 are separated by 132 nucleotides PS417_21235 and PS417_21240 overlap by 4 nucleotides
PS417_21220: PS417_21220 - acetyl-CoA acetyltransferase, at 4,615,096 to 4,616,301
_21220
PS417_21230: PS417_21230 - cytochrome C, at 4,616,948 to 4,617,751
_21230
PS417_21235: PS417_21235 - transglutaminase, at 4,617,884 to 4,618,687
_21235
PS417_21240: PS417_21240 - hypothetical protein, at 4,618,684 to 4,619,634
_21240
Position (kb)
4616
4617
4618 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4616.340 kb on - strand at 4616.417 kb on + strand at 4616.417 kb on + strand at 4616.423 kb on - strand at 4616.423 kb on - strand at 4616.558 kb on - strand at 4616.558 kb on - strand at 4616.711 kb on + strand at 4616.727 kb on + strand at 4616.728 kb on - strand at 4616.728 kb on - strand at 4616.728 kb on - strand at 4616.728 kb on - strand at 4616.800 kb on + strand at 4616.801 kb on - strand at 4616.801 kb on - strand at 4617.118 kb on + strand, within PS417_21230 at 4617.119 kb on - strand, within PS417_21230 at 4617.119 kb on - strand, within PS417_21230 at 4617.329 kb on + strand, within PS417_21230 at 4617.329 kb on + strand, within PS417_21230 at 4617.330 kb on - strand, within PS417_21230 at 4617.572 kb on + strand, within PS417_21230 at 4617.614 kb on + strand, within PS417_21230 at 4617.615 kb on - strand, within PS417_21230 at 4617.615 kb on - strand at 4617.615 kb on - strand, within PS417_21230 at 4617.716 kb on + strand at 4617.717 kb on - strand at 4617.749 kb on + strand at 4617.750 kb on - strand at 4617.833 kb on - strand at 4617.993 kb on + strand, within PS417_21235 at 4618.062 kb on + strand, within PS417_21235 at 4618.063 kb on - strand, within PS417_21235 at 4618.129 kb on - strand, within PS417_21235 at 4618.146 kb on + strand, within PS417_21235 at 4618.272 kb on + strand, within PS417_21235 at 4618.273 kb on - strand, within PS417_21235 at 4618.621 kb on - strand at 4618.621 kb on - strand at 4618.656 kb on + strand at 4618.656 kb on + strand at 4618.657 kb on - strand at 4618.709 kb on + strand at 4618.709 kb on + strand at 4618.709 kb on + strand at 4618.709 kb on + strand at 4618.709 kb on + strand at 4618.709 kb on + strand at 4618.710 kb on - strand at 4618.710 kb on - strand at 4618.710 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,616,340 - -2.0 4,616,417 + +1.9 4,616,417 + -0.5 4,616,423 - -1.1 4,616,423 - -1.1 4,616,558 - -1.0 4,616,558 - +0.2 4,616,711 + +0.4 4,616,727 + -1.0 4,616,728 - -1.0 4,616,728 - -0.3 4,616,728 - -0.8 4,616,728 - +3.3 4,616,800 + +1.7 4,616,801 - -0.8 4,616,801 - -1.0 4,617,118 + PS417_21230 0.21 +1.8 4,617,119 - PS417_21230 0.21 +1.0 4,617,119 - PS417_21230 0.21 +0.5 4,617,329 + PS417_21230 0.47 +0.6 4,617,329 + PS417_21230 0.47 -0.3 4,617,330 - PS417_21230 0.48 +0.8 4,617,572 + PS417_21230 0.78 -0.4 4,617,614 + PS417_21230 0.83 -1.4 4,617,615 - PS417_21230 0.83 +1.6 4,617,615 - +0.4 4,617,615 - PS417_21230 0.83 -1.8 4,617,716 + -1.0 4,617,717 - -1.0 4,617,749 + -0.1 4,617,750 - -0.8 4,617,833 - +0.8 4,617,993 + PS417_21235 0.14 +0.6 4,618,062 + PS417_21235 0.22 -2.3 4,618,063 - PS417_21235 0.22 +0.6 4,618,129 - PS417_21235 0.30 -2.8 4,618,146 + PS417_21235 0.33 +0.0 4,618,272 + PS417_21235 0.48 +0.7 4,618,273 - PS417_21235 0.48 -0.4 4,618,621 - +0.6 4,618,621 - +1.0 4,618,656 + +0.5 4,618,656 + +0.3 4,618,657 - -1.0 4,618,709 + -2.3 4,618,709 + -0.8 4,618,709 + +0.9 4,618,709 + -1.2 4,618,709 + +0.9 4,618,709 + +1.2 4,618,710 - +1.0 4,618,710 - -0.6 4,618,710 - -0.1
Or see this region's nucleotide sequence