Strain Fitness in Pseudomonas simiae WCS417 around PS417_20450

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20440 and PS417_20445 are separated by 140 nucleotidesPS417_20445 and PS417_20450 are separated by 9 nucleotidesPS417_20450 and PS417_20455 are separated by 118 nucleotides PS417_20440: PS417_20440 - integrase, at 4,438,056 to 4,439,441 _20440 PS417_20445: PS417_20445 - hypothetical protein, at 4,439,582 to 4,440,427 _20445 PS417_20450: PS417_20450 - hypothetical protein, at 4,440,437 to 4,441,369 _20450 PS417_20455: PS417_20455 - hypothetical protein, at 4,441,488 to 4,442,846 _20455 Position (kb) 4440 4441 4442Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 4439.444 kb on + strandat 4439.468 kb on + strandat 4439.507 kb on + strandat 4439.547 kb on + strandat 4439.547 kb on + strandat 4439.679 kb on + strand, within PS417_20445at 4439.697 kb on + strand, within PS417_20445at 4439.697 kb on + strand, within PS417_20445at 4439.727 kb on + strand, within PS417_20445at 4439.767 kb on - strand, within PS417_20445at 4439.869 kb on + strand, within PS417_20445at 4439.869 kb on + strand, within PS417_20445at 4439.962 kb on + strand, within PS417_20445at 4439.964 kb on + strand, within PS417_20445at 4439.964 kb on + strand, within PS417_20445at 4439.964 kb on + strand, within PS417_20445at 4439.964 kb on + strand, within PS417_20445at 4439.965 kb on - strand, within PS417_20445at 4439.965 kb on - strand, within PS417_20445at 4439.965 kb on - strand, within PS417_20445at 4440.000 kb on - strand, within PS417_20445at 4440.086 kb on + strand, within PS417_20445at 4440.086 kb on + strand, within PS417_20445at 4440.087 kb on - strand, within PS417_20445at 4440.087 kb on - strand, within PS417_20445at 4440.201 kb on + strand, within PS417_20445at 4440.202 kb on - strand, within PS417_20445at 4440.202 kb on - strand, within PS417_20445at 4440.505 kb on + strandat 4440.505 kb on + strandat 4440.507 kb on + strandat 4440.507 kb on + strandat 4440.508 kb on - strandat 4440.512 kb on + strandat 4440.527 kb on + strandat 4440.631 kb on - strand, within PS417_20450at 4440.631 kb on - strand, within PS417_20450at 4440.633 kb on + strand, within PS417_20450at 4440.633 kb on + strand, within PS417_20450at 4440.634 kb on - strand, within PS417_20450at 4440.634 kb on - strandat 4440.778 kb on - strandat 4440.778 kb on - strand, within PS417_20450at 4440.778 kb on - strand, within PS417_20450at 4440.880 kb on + strand, within PS417_20450at 4440.881 kb on - strand, within PS417_20450at 4440.971 kb on + strand, within PS417_20450at 4440.971 kb on + strand, within PS417_20450at 4440.972 kb on - strand, within PS417_20450at 4441.014 kb on + strand, within PS417_20450at 4441.014 kb on + strand, within PS417_20450at 4441.014 kb on + strand, within PS417_20450at 4441.014 kb on + strand, within PS417_20450at 4441.109 kb on + strand, within PS417_20450at 4441.110 kb on - strand, within PS417_20450at 4441.137 kb on + strand, within PS417_20450at 4441.137 kb on + strand, within PS417_20450at 4441.138 kb on - strand, within PS417_20450at 4441.138 kb on - strand, within PS417_20450at 4441.138 kb on - strand, within PS417_20450at 4441.141 kb on + strand, within PS417_20450at 4441.142 kb on - strand, within PS417_20450at 4441.151 kb on + strand, within PS417_20450at 4441.200 kb on + strand, within PS417_20450at 4441.200 kb on + strand, within PS417_20450at 4441.200 kb on + strand, within PS417_20450at 4441.201 kb on - strand, within PS417_20450at 4441.201 kb on - strandat 4441.201 kb on - strand, within PS417_20450at 4441.218 kb on + strand, within PS417_20450at 4441.219 kb on - strand, within PS417_20450at 4441.219 kb on - strand, within PS417_20450at 4441.411 kb on + strandat 4441.468 kb on - strandat 4441.570 kb on + strandat 4441.571 kb on - strandat 4441.634 kb on - strand, within PS417_20455at 4441.655 kb on - strand, within PS417_20455at 4441.657 kb on + strand, within PS417_20455at 4441.657 kb on + strand, within PS417_20455at 4441.657 kb on + strand, within PS417_20455at 4441.657 kb on + strand, within PS417_20455at 4441.658 kb on - strandat 4441.658 kb on - strand, within PS417_20455at 4441.658 kb on - strand, within PS417_20455at 4441.751 kb on - strand, within PS417_20455at 4441.766 kb on + strand, within PS417_20455at 4441.766 kb on + strand, within PS417_20455at 4441.766 kb on + strand, within PS417_20455at 4441.900 kb on + strand, within PS417_20455at 4441.900 kb on + strand, within PS417_20455at 4441.901 kb on - strand, within PS417_20455at 4441.901 kb on - strand, within PS417_20455at 4441.901 kb on - strand, within PS417_20455at 4441.970 kb on + strand, within PS417_20455at 4441.972 kb on + strand, within PS417_20455at 4441.973 kb on - strand, within PS417_20455at 4442.094 kb on + strand, within PS417_20455at 4442.094 kb on + strand, within PS417_20455at 4442.113 kb on + strand, within PS417_20455at 4442.113 kb on + strandat 4442.114 kb on - strand, within PS417_20455at 4442.176 kb on - strand, within PS417_20455at 4442.344 kb on - strand, within PS417_20455at 4442.344 kb on - strand, within PS417_20455

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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4,439,444 + +0.5
4,439,468 + +0.1
4,439,507 + -0.5
4,439,547 + +0.1
4,439,547 + +0.9
4,439,679 + PS417_20445 0.11 +0.6
4,439,697 + PS417_20445 0.14 +1.3
4,439,697 + PS417_20445 0.14 +0.7
4,439,727 + PS417_20445 0.17 +0.7
4,439,767 - PS417_20445 0.22 -0.2
4,439,869 + PS417_20445 0.34 +0.5
4,439,869 + PS417_20445 0.34 +1.0
4,439,962 + PS417_20445 0.45 -0.8
4,439,964 + PS417_20445 0.45 -2.2
4,439,964 + PS417_20445 0.45 +2.0
4,439,964 + PS417_20445 0.45 -0.6
4,439,964 + PS417_20445 0.45 +0.2
4,439,965 - PS417_20445 0.45 +1.0
4,439,965 - PS417_20445 0.45 -0.0
4,439,965 - PS417_20445 0.45 -1.1
4,440,000 - PS417_20445 0.49 +0.0
4,440,086 + PS417_20445 0.60 -2.2
4,440,086 + PS417_20445 0.60 -1.0
4,440,087 - PS417_20445 0.60 -0.6
4,440,087 - PS417_20445 0.60 +0.4
4,440,201 + PS417_20445 0.73 -0.5
4,440,202 - PS417_20445 0.73 +1.1
4,440,202 - PS417_20445 0.73 +0.1
4,440,505 + +0.9
4,440,505 + +0.8
4,440,507 + -1.1
4,440,507 + +0.4
4,440,508 - +1.1
4,440,512 + +0.4
4,440,527 + +0.4
4,440,631 - PS417_20450 0.21 +0.2
4,440,631 - PS417_20450 0.21 +0.8
4,440,633 + PS417_20450 0.21 +2.1
4,440,633 + PS417_20450 0.21 +1.2
4,440,634 - PS417_20450 0.21 -0.3
4,440,634 - -0.2
4,440,778 - +0.1
4,440,778 - PS417_20450 0.37 +0.8
4,440,778 - PS417_20450 0.37 +0.0
4,440,880 + PS417_20450 0.47 +0.2
4,440,881 - PS417_20450 0.48 +0.1
4,440,971 + PS417_20450 0.57 -1.1
4,440,971 + PS417_20450 0.57 +0.5
4,440,972 - PS417_20450 0.57 -2.6
4,441,014 + PS417_20450 0.62 -0.9
4,441,014 + PS417_20450 0.62 -0.5
4,441,014 + PS417_20450 0.62 +1.5
4,441,014 + PS417_20450 0.62 +0.3
4,441,109 + PS417_20450 0.72 -0.3
4,441,110 - PS417_20450 0.72 -1.8
4,441,137 + PS417_20450 0.75 +0.2
4,441,137 + PS417_20450 0.75 +0.4
4,441,138 - PS417_20450 0.75 +0.3
4,441,138 - PS417_20450 0.75 +1.6
4,441,138 - PS417_20450 0.75 -1.0
4,441,141 + PS417_20450 0.75 +0.8
4,441,142 - PS417_20450 0.76 +0.9
4,441,151 + PS417_20450 0.77 +1.5
4,441,200 + PS417_20450 0.82 -0.7
4,441,200 + PS417_20450 0.82 -0.4
4,441,200 + PS417_20450 0.82 +0.0
4,441,201 - PS417_20450 0.82 -2.5
4,441,201 - +0.1
4,441,201 - PS417_20450 0.82 +0.3
4,441,218 + PS417_20450 0.84 +0.8
4,441,219 - PS417_20450 0.84 +0.4
4,441,219 - PS417_20450 0.84 +0.5
4,441,411 + +0.8
4,441,468 - -0.2
4,441,570 + +0.7
4,441,571 - -7.4
4,441,634 - PS417_20455 0.11 -2.6
4,441,655 - PS417_20455 0.12 +0.8
4,441,657 + PS417_20455 0.12 +0.2
4,441,657 + PS417_20455 0.12 +0.6
4,441,657 + PS417_20455 0.12 -0.8
4,441,657 + PS417_20455 0.12 -1.6
4,441,658 - +1.1
4,441,658 - PS417_20455 0.13 -0.7
4,441,658 - PS417_20455 0.13 +0.6
4,441,751 - PS417_20455 0.19 -1.5
4,441,766 + PS417_20455 0.20 -0.1
4,441,766 + PS417_20455 0.20 +0.2
4,441,766 + PS417_20455 0.20 -0.6
4,441,900 + PS417_20455 0.30 +1.6
4,441,900 + PS417_20455 0.30 -2.5
4,441,901 - PS417_20455 0.30 -2.0
4,441,901 - PS417_20455 0.30 +1.3
4,441,901 - PS417_20455 0.30 -0.4
4,441,970 + PS417_20455 0.35 -0.3
4,441,972 + PS417_20455 0.36 -0.5
4,441,973 - PS417_20455 0.36 -2.1
4,442,094 + PS417_20455 0.45 +0.1
4,442,094 + PS417_20455 0.45 -1.5
4,442,113 + PS417_20455 0.46 -0.1
4,442,113 + -0.7
4,442,114 - PS417_20455 0.46 -1.2
4,442,176 - PS417_20455 0.51 -1.5
4,442,344 - PS417_20455 0.63 -0.3
4,442,344 - PS417_20455 0.63 -2.4

Or see this region's nucleotide sequence