Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18990 and PS417_18995 are separated by 57 nucleotides PS417_18995 and PS417_19000 are separated by 94 nucleotides
PS417_18990: PS417_18990 - membrane protein, at 4,110,127 to 4,111,338
_18990
PS417_18995: PS417_18995 - endonuclease, at 4,111,396 to 4,112,190
_18995
PS417_19000: PS417_19000 - MFS transporter, at 4,112,285 to 4,113,502
_19000
Position (kb)
4111
4112
4113 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4110.441 kb on + strand, within PS417_18990 at 4110.441 kb on + strand, within PS417_18990 at 4110.441 kb on + strand, within PS417_18990 at 4110.442 kb on - strand, within PS417_18990 at 4110.564 kb on + strand, within PS417_18990 at 4110.602 kb on + strand, within PS417_18990 at 4111.385 kb on - strand at 4111.386 kb on + strand at 4111.386 kb on + strand at 4111.387 kb on - strand at 4111.473 kb on - strand at 4111.517 kb on + strand, within PS417_18995 at 4111.517 kb on + strand, within PS417_18995 at 4111.517 kb on + strand, within PS417_18995 at 4111.517 kb on + strand, within PS417_18995 at 4111.518 kb on - strand, within PS417_18995 at 4111.547 kb on + strand, within PS417_18995 at 4111.637 kb on + strand, within PS417_18995 at 4111.638 kb on - strand, within PS417_18995 at 4111.974 kb on - strand, within PS417_18995 at 4111.974 kb on - strand, within PS417_18995 at 4112.186 kb on + strand at 4112.186 kb on + strand at 4112.186 kb on + strand at 4112.186 kb on + strand at 4112.186 kb on + strand at 4112.187 kb on - strand at 4112.187 kb on - strand at 4112.187 kb on - strand at 4112.195 kb on + strand at 4112.195 kb on + strand at 4112.195 kb on + strand at 4112.196 kb on - strand at 4112.265 kb on - strand at 4112.432 kb on + strand, within PS417_19000 at 4112.432 kb on + strand, within PS417_19000 at 4112.593 kb on - strand, within PS417_19000 at 4112.593 kb on - strand at 4112.799 kb on + strand at 4112.806 kb on - strand, within PS417_19000 at 4112.806 kb on - strand, within PS417_19000 at 4112.806 kb on - strand, within PS417_19000 at 4112.858 kb on + strand, within PS417_19000 at 4112.905 kb on + strand, within PS417_19000 at 4112.905 kb on + strand, within PS417_19000 at 4112.905 kb on + strand, within PS417_19000 at 4112.906 kb on - strand, within PS417_19000
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,110,441 + PS417_18990 0.26 -0.8 4,110,441 + PS417_18990 0.26 +0.5 4,110,441 + PS417_18990 0.26 -0.9 4,110,442 - PS417_18990 0.26 +0.9 4,110,564 + PS417_18990 0.36 -0.9 4,110,602 + PS417_18990 0.39 -2.8 4,111,385 - +0.5 4,111,386 + -0.6 4,111,386 + -0.1 4,111,387 - +0.7 4,111,473 - +1.0 4,111,517 + PS417_18995 0.15 +2.7 4,111,517 + PS417_18995 0.15 +0.7 4,111,517 + PS417_18995 0.15 +3.0 4,111,517 + PS417_18995 0.15 -0.2 4,111,518 - PS417_18995 0.15 +0.1 4,111,547 + PS417_18995 0.19 -1.7 4,111,637 + PS417_18995 0.30 +0.5 4,111,638 - PS417_18995 0.30 +0.7 4,111,974 - PS417_18995 0.73 -0.1 4,111,974 - PS417_18995 0.73 -0.3 4,112,186 + -2.4 4,112,186 + -0.5 4,112,186 + -2.9 4,112,186 + +0.8 4,112,186 + +0.6 4,112,187 - -0.1 4,112,187 - +0.6 4,112,187 - +0.9 4,112,195 + +1.9 4,112,195 + -0.5 4,112,195 + +1.4 4,112,196 - -2.9 4,112,265 - -0.3 4,112,432 + PS417_19000 0.12 -0.8 4,112,432 + PS417_19000 0.12 -1.5 4,112,593 - PS417_19000 0.25 -0.1 4,112,593 - -1.0 4,112,799 + -0.3 4,112,806 - PS417_19000 0.43 -1.6 4,112,806 - PS417_19000 0.43 +0.0 4,112,806 - PS417_19000 0.43 -0.3 4,112,858 + PS417_19000 0.47 +0.0 4,112,905 + PS417_19000 0.51 -1.0 4,112,905 + PS417_19000 0.51 +0.3 4,112,905 + PS417_19000 0.51 -0.1 4,112,906 - PS417_19000 0.51 -0.5
Or see this region's nucleotide sequence