Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18005 and PS417_18010 are separated by 96 nucleotides PS417_18010 and PS417_18015 are separated by 45 nucleotides PS417_18015 and PS417_18020 are separated by 10 nucleotides
PS417_18005: PS417_18005 - hypothetical protein, at 3,925,463 to 3,927,391
_18005
PS417_18010: PS417_18010 - acid phosphatase, at 3,927,488 to 3,928,312
_18010
PS417_18015: PS417_18015 - membrane protein, at 3,928,358 to 3,929,131
_18015
PS417_18020: PS417_18020 - hypothetical protein, at 3,929,142 to 3,929,534
_18020
Position (kb)
3927
3928
3929 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3926.510 kb on - strand at 3926.587 kb on + strand, within PS417_18005 at 3926.588 kb on - strand, within PS417_18005 at 3926.630 kb on + strand, within PS417_18005 at 3926.676 kb on - strand, within PS417_18005 at 3926.676 kb on - strand at 3926.741 kb on + strand, within PS417_18005 at 3926.769 kb on + strand, within PS417_18005 at 3926.913 kb on + strand, within PS417_18005 at 3926.913 kb on + strand, within PS417_18005 at 3927.025 kb on + strand, within PS417_18005 at 3927.075 kb on + strand, within PS417_18005 at 3927.075 kb on + strand, within PS417_18005 at 3927.076 kb on - strand, within PS417_18005 at 3927.176 kb on + strand, within PS417_18005 at 3927.251 kb on + strand at 3928.167 kb on - strand, within PS417_18010 at 3928.214 kb on + strand, within PS417_18010 at 3928.227 kb on - strand, within PS417_18010 at 3928.563 kb on + strand, within PS417_18015 at 3928.564 kb on - strand, within PS417_18015 at 3929.151 kb on - strand at 3929.302 kb on + strand, within PS417_18020 at 3929.303 kb on - strand, within PS417_18020
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,926,510 - +2.9 3,926,587 + PS417_18005 0.58 -0.2 3,926,588 - PS417_18005 0.58 +0.4 3,926,630 + PS417_18005 0.60 +0.6 3,926,676 - PS417_18005 0.63 +1.1 3,926,676 - +0.0 3,926,741 + PS417_18005 0.66 +1.4 3,926,769 + PS417_18005 0.68 +0.5 3,926,913 + PS417_18005 0.75 -0.9 3,926,913 + PS417_18005 0.75 -3.7 3,927,025 + PS417_18005 0.81 +0.2 3,927,075 + PS417_18005 0.84 +2.0 3,927,075 + PS417_18005 0.84 +3.7 3,927,076 - PS417_18005 0.84 +0.3 3,927,176 + PS417_18005 0.89 -0.4 3,927,251 + +0.6 3,928,167 - PS417_18010 0.82 -0.5 3,928,214 + PS417_18010 0.88 -3.1 3,928,227 - PS417_18010 0.90 -0.6 3,928,563 + PS417_18015 0.26 -1.8 3,928,564 - PS417_18015 0.27 +0.2 3,929,151 - -1.8 3,929,302 + PS417_18020 0.41 +0.1 3,929,303 - PS417_18020 0.41 +1.9
Or see this region's nucleotide sequence