Strain Fitness in Pseudomonas simiae WCS417 around PS417_18010

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18005 and PS417_18010 are separated by 96 nucleotidesPS417_18010 and PS417_18015 are separated by 45 nucleotidesPS417_18015 and PS417_18020 are separated by 10 nucleotides PS417_18005: PS417_18005 - hypothetical protein, at 3,925,463 to 3,927,391 _18005 PS417_18010: PS417_18010 - acid phosphatase, at 3,927,488 to 3,928,312 _18010 PS417_18015: PS417_18015 - membrane protein, at 3,928,358 to 3,929,131 _18015 PS417_18020: PS417_18020 - hypothetical protein, at 3,929,142 to 3,929,534 _18020 Position (kb) 3927 3928 3929Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3926.510 kb on - strandat 3926.587 kb on + strand, within PS417_18005at 3926.588 kb on - strand, within PS417_18005at 3926.630 kb on + strand, within PS417_18005at 3926.676 kb on - strand, within PS417_18005at 3926.676 kb on - strandat 3926.741 kb on + strand, within PS417_18005at 3926.769 kb on + strand, within PS417_18005at 3926.913 kb on + strand, within PS417_18005at 3926.913 kb on + strand, within PS417_18005at 3927.025 kb on + strand, within PS417_18005at 3927.075 kb on + strand, within PS417_18005at 3927.075 kb on + strand, within PS417_18005at 3927.076 kb on - strand, within PS417_18005at 3927.176 kb on + strand, within PS417_18005at 3927.251 kb on + strandat 3928.167 kb on - strand, within PS417_18010at 3928.214 kb on + strand, within PS417_18010at 3928.227 kb on - strand, within PS417_18010at 3928.563 kb on + strand, within PS417_18015at 3928.564 kb on - strand, within PS417_18015at 3929.151 kb on - strandat 3929.302 kb on + strand, within PS417_18020at 3929.303 kb on - strand, within PS417_18020

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,926,510 - +2.9
3,926,587 + PS417_18005 0.58 -0.2
3,926,588 - PS417_18005 0.58 +0.4
3,926,630 + PS417_18005 0.60 +0.6
3,926,676 - PS417_18005 0.63 +1.1
3,926,676 - +0.0
3,926,741 + PS417_18005 0.66 +1.4
3,926,769 + PS417_18005 0.68 +0.5
3,926,913 + PS417_18005 0.75 -0.9
3,926,913 + PS417_18005 0.75 -3.7
3,927,025 + PS417_18005 0.81 +0.2
3,927,075 + PS417_18005 0.84 +2.0
3,927,075 + PS417_18005 0.84 +3.7
3,927,076 - PS417_18005 0.84 +0.3
3,927,176 + PS417_18005 0.89 -0.4
3,927,251 + +0.6
3,928,167 - PS417_18010 0.82 -0.5
3,928,214 + PS417_18010 0.88 -3.1
3,928,227 - PS417_18010 0.90 -0.6
3,928,563 + PS417_18015 0.26 -1.8
3,928,564 - PS417_18015 0.27 +0.2
3,929,151 - -1.8
3,929,302 + PS417_18020 0.41 +0.1
3,929,303 - PS417_18020 0.41 +1.9

Or see this region's nucleotide sequence