Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16180 and PS417_16185 are separated by 123 nucleotides PS417_16185 and PS417_16190 are separated by 86 nucleotides
PS417_16180: PS417_16180 - MFS transporter, at 3,547,115 to 3,548,299
_16180
PS417_16185: PS417_16185 - hypothetical protein, at 3,548,423 to 3,548,782
_16185
PS417_16190: PS417_16190 - bile acid:sodium symporter, at 3,548,869 to 3,549,867
_16190
Position (kb)
3548
3549 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 3547.609 kb on - strand, within PS417_16180 at 3547.609 kb on - strand, within PS417_16180 at 3547.656 kb on + strand, within PS417_16180 at 3548.036 kb on - strand, within PS417_16180 at 3548.130 kb on + strand, within PS417_16180 at 3548.131 kb on - strand, within PS417_16180 at 3548.367 kb on - strand at 3548.367 kb on - strand at 3548.368 kb on + strand at 3548.449 kb on - strand at 3548.449 kb on - strand at 3548.490 kb on - strand, within PS417_16185 at 3548.494 kb on - strand, within PS417_16185 at 3548.506 kb on - strand, within PS417_16185 at 3548.509 kb on - strand, within PS417_16185 at 3548.834 kb on + strand at 3548.865 kb on + strand at 3549.236 kb on + strand, within PS417_16190 at 3549.403 kb on + strand, within PS417_16190 at 3549.403 kb on + strand, within PS417_16190 at 3549.404 kb on - strand, within PS417_16190 at 3549.555 kb on - strand, within PS417_16190 at 3549.555 kb on - strand, within PS417_16190 at 3549.569 kb on + strand, within PS417_16190 at 3549.570 kb on - strand, within PS417_16190 at 3549.570 kb on - strand, within PS417_16190 at 3549.570 kb on - strand, within PS417_16190 at 3549.570 kb on - strand, within PS417_16190
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,547,609 - PS417_16180 0.42 -0.6 3,547,609 - PS417_16180 0.42 -1.2 3,547,656 + PS417_16180 0.46 +0.7 3,548,036 - PS417_16180 0.78 -0.6 3,548,130 + PS417_16180 0.86 +0.2 3,548,131 - PS417_16180 0.86 -0.7 3,548,367 - +0.8 3,548,367 - -0.0 3,548,368 + -1.5 3,548,449 - -1.2 3,548,449 - -1.3 3,548,490 - PS417_16185 0.19 +1.1 3,548,494 - PS417_16185 0.20 +2.0 3,548,506 - PS417_16185 0.23 +0.7 3,548,509 - PS417_16185 0.24 -5.1 3,548,834 + -0.5 3,548,865 + +2.7 3,549,236 + PS417_16190 0.37 -0.4 3,549,403 + PS417_16190 0.53 -1.6 3,549,403 + PS417_16190 0.53 -0.1 3,549,404 - PS417_16190 0.54 -0.6 3,549,555 - PS417_16190 0.69 -2.4 3,549,555 - PS417_16190 0.69 -0.4 3,549,569 + PS417_16190 0.70 -0.1 3,549,570 - PS417_16190 0.70 +1.3 3,549,570 - PS417_16190 0.70 -1.2 3,549,570 - PS417_16190 0.70 +0.1 3,549,570 - PS417_16190 0.70 +1.3
Or see this region's nucleotide sequence