Strain Fitness in Pseudomonas simiae WCS417 around PS417_16185

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16180 and PS417_16185 are separated by 123 nucleotidesPS417_16185 and PS417_16190 are separated by 86 nucleotides PS417_16180: PS417_16180 - MFS transporter, at 3,547,115 to 3,548,299 _16180 PS417_16185: PS417_16185 - hypothetical protein, at 3,548,423 to 3,548,782 _16185 PS417_16190: PS417_16190 - bile acid:sodium symporter, at 3,548,869 to 3,549,867 _16190 Position (kb) 3548 3549Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3547.609 kb on - strand, within PS417_16180at 3547.609 kb on - strand, within PS417_16180at 3547.656 kb on + strand, within PS417_16180at 3548.036 kb on - strand, within PS417_16180at 3548.130 kb on + strand, within PS417_16180at 3548.131 kb on - strand, within PS417_16180at 3548.367 kb on - strandat 3548.367 kb on - strandat 3548.368 kb on + strandat 3548.449 kb on - strandat 3548.449 kb on - strandat 3548.490 kb on - strand, within PS417_16185at 3548.494 kb on - strand, within PS417_16185at 3548.506 kb on - strand, within PS417_16185at 3548.509 kb on - strand, within PS417_16185at 3548.834 kb on + strandat 3548.865 kb on + strandat 3549.236 kb on + strand, within PS417_16190at 3549.403 kb on + strand, within PS417_16190at 3549.403 kb on + strand, within PS417_16190at 3549.404 kb on - strand, within PS417_16190at 3549.555 kb on - strand, within PS417_16190at 3549.555 kb on - strand, within PS417_16190at 3549.569 kb on + strand, within PS417_16190at 3549.570 kb on - strand, within PS417_16190at 3549.570 kb on - strand, within PS417_16190at 3549.570 kb on - strand, within PS417_16190at 3549.570 kb on - strand, within PS417_16190

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,547,609 - PS417_16180 0.42 -0.6
3,547,609 - PS417_16180 0.42 -1.2
3,547,656 + PS417_16180 0.46 +0.7
3,548,036 - PS417_16180 0.78 -0.6
3,548,130 + PS417_16180 0.86 +0.2
3,548,131 - PS417_16180 0.86 -0.7
3,548,367 - +0.8
3,548,367 - -0.0
3,548,368 + -1.5
3,548,449 - -1.2
3,548,449 - -1.3
3,548,490 - PS417_16185 0.19 +1.1
3,548,494 - PS417_16185 0.20 +2.0
3,548,506 - PS417_16185 0.23 +0.7
3,548,509 - PS417_16185 0.24 -5.1
3,548,834 + -0.5
3,548,865 + +2.7
3,549,236 + PS417_16190 0.37 -0.4
3,549,403 + PS417_16190 0.53 -1.6
3,549,403 + PS417_16190 0.53 -0.1
3,549,404 - PS417_16190 0.54 -0.6
3,549,555 - PS417_16190 0.69 -2.4
3,549,555 - PS417_16190 0.69 -0.4
3,549,569 + PS417_16190 0.70 -0.1
3,549,570 - PS417_16190 0.70 +1.3
3,549,570 - PS417_16190 0.70 -1.2
3,549,570 - PS417_16190 0.70 +0.1
3,549,570 - PS417_16190 0.70 +1.3

Or see this region's nucleotide sequence