Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15945 and PS417_15950 are separated by 76 nucleotides PS417_15950 and PS417_15955 are separated by 99 nucleotides
PS417_15945: PS417_15945 - quercetin 2,3-dioxygenase, at 3,488,981 to 3,489,847
_15945
PS417_15950: PS417_15950 - major facilitator transporter, at 3,489,924 to 3,491,129
_15950
PS417_15955: PS417_15955 - secretion protein HylD, at 3,491,229 to 3,492,335
_15955
Position (kb)
3489
3490
3491
3492 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3488.969 kb on + strand at 3489.826 kb on - strand at 3489.875 kb on - strand at 3489.875 kb on - strand at 3489.875 kb on - strand at 3489.925 kb on + strand at 3489.925 kb on + strand at 3489.926 kb on - strand at 3489.926 kb on - strand at 3489.932 kb on - strand at 3490.330 kb on + strand, within PS417_15950 at 3490.331 kb on - strand, within PS417_15950 at 3490.381 kb on + strand, within PS417_15950 at 3490.412 kb on + strand, within PS417_15950 at 3490.456 kb on + strand, within PS417_15950 at 3490.457 kb on - strand, within PS417_15950 at 3490.457 kb on - strand, within PS417_15950 at 3490.752 kb on + strand, within PS417_15950 at 3490.753 kb on - strand, within PS417_15950 at 3490.753 kb on - strand at 3490.876 kb on + strand, within PS417_15950 at 3491.188 kb on - strand at 3491.454 kb on - strand, within PS417_15955 at 3492.001 kb on - strand, within PS417_15955 at 3492.052 kb on + strand, within PS417_15955
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,488,969 + -1.5 3,489,826 - +0.6 3,489,875 - -0.9 3,489,875 - -2.5 3,489,875 - +0.1 3,489,925 + -1.0 3,489,925 + -2.3 3,489,926 - +0.2 3,489,926 - -0.5 3,489,932 - +0.6 3,490,330 + PS417_15950 0.34 +0.8 3,490,331 - PS417_15950 0.34 +1.8 3,490,381 + PS417_15950 0.38 +0.7 3,490,412 + PS417_15950 0.40 +0.6 3,490,456 + PS417_15950 0.44 +0.2 3,490,457 - PS417_15950 0.44 +0.4 3,490,457 - PS417_15950 0.44 +0.7 3,490,752 + PS417_15950 0.69 +0.4 3,490,753 - PS417_15950 0.69 +1.0 3,490,753 - +1.6 3,490,876 + PS417_15950 0.79 +0.1 3,491,188 - +1.0 3,491,454 - PS417_15955 0.20 +0.8 3,492,001 - PS417_15955 0.70 +0.3 3,492,052 + PS417_15955 0.74 -0.3
Or see this region's nucleotide sequence