Strain Fitness in Pseudomonas simiae WCS417 around PS417_14800

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14785 and PS417_14790 are separated by 51 nucleotidesPS417_14790 and PS417_14800 are separated by 245 nucleotidesPS417_14800 and PS417_14805 overlap by 8 nucleotidesPS417_14805 and PS417_14810 are separated by 98 nucleotides PS417_14785: PS417_14785 - glycine/betaine ABC transporter, at 3,231,464 to 3,232,966 _14785 PS417_14790: PS417_14790 - diguanylate cyclase, at 3,233,018 to 3,233,521 _14790 PS417_14800: PS417_14800 - diguanylate cyclase, at 3,233,767 to 3,236,349 _14800 PS417_14805: PS417_14805 - AraC family transcriptional regulator, at 3,236,342 to 3,237,163 _14805 PS417_14810: PS417_14810 - Fosmidomycin resistance protein, at 3,237,262 to 3,238,473 _14810 Position (kb) 3233 3234 3235 3236 3237Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3232.942 kb on - strandat 3232.977 kb on + strandat 3232.977 kb on + strandat 3233.490 kb on + strandat 3233.500 kb on + strandat 3233.947 kb on + strandat 3233.947 kb on + strandat 3233.955 kb on + strandat 3233.956 kb on - strandat 3234.151 kb on + strand, within PS417_14800at 3234.152 kb on - strand, within PS417_14800at 3234.558 kb on - strand, within PS417_14800at 3234.772 kb on - strand, within PS417_14800at 3234.776 kb on - strandat 3234.929 kb on - strand, within PS417_14800at 3235.311 kb on - strandat 3235.332 kb on + strand, within PS417_14800at 3235.333 kb on - strand, within PS417_14800at 3235.379 kb on + strand, within PS417_14800at 3235.379 kb on + strand, within PS417_14800at 3235.527 kb on + strandat 3236.016 kb on - strand, within PS417_14800at 3236.062 kb on + strand, within PS417_14800at 3236.062 kb on + strand, within PS417_14800at 3236.564 kb on + strand, within PS417_14805at 3236.565 kb on - strand, within PS417_14805at 3237.176 kb on + strandat 3237.249 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,232,942 - -0.7
3,232,977 + +1.7
3,232,977 + -1.0
3,233,490 + -0.1
3,233,500 + -2.6
3,233,947 + -0.0
3,233,947 + -0.1
3,233,955 + +0.1
3,233,956 - -0.6
3,234,151 + PS417_14800 0.15 -0.0
3,234,152 - PS417_14800 0.15 -1.4
3,234,558 - PS417_14800 0.31 -0.5
3,234,772 - PS417_14800 0.39 -0.7
3,234,776 - +0.8
3,234,929 - PS417_14800 0.45 +0.2
3,235,311 - +1.9
3,235,332 + PS417_14800 0.61 -0.5
3,235,333 - PS417_14800 0.61 -1.6
3,235,379 + PS417_14800 0.62 -1.5
3,235,379 + PS417_14800 0.62 -0.6
3,235,527 + +3.8
3,236,016 - PS417_14800 0.87 +0.4
3,236,062 + PS417_14800 0.89 -0.3
3,236,062 + PS417_14800 0.89 +0.4
3,236,564 + PS417_14805 0.27 -0.4
3,236,565 - PS417_14805 0.27 +1.7
3,237,176 + -0.2
3,237,249 - -0.4

Or see this region's nucleotide sequence