Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14785 and PS417_14790 are separated by 51 nucleotides PS417_14790 and PS417_14800 are separated by 245 nucleotides PS417_14800 and PS417_14805 overlap by 8 nucleotides PS417_14805 and PS417_14810 are separated by 98 nucleotides
PS417_14785: PS417_14785 - glycine/betaine ABC transporter, at 3,231,464 to 3,232,966
_14785
PS417_14790: PS417_14790 - diguanylate cyclase, at 3,233,018 to 3,233,521
_14790
PS417_14800: PS417_14800 - diguanylate cyclase, at 3,233,767 to 3,236,349
_14800
PS417_14805: PS417_14805 - AraC family transcriptional regulator, at 3,236,342 to 3,237,163
_14805
PS417_14810: PS417_14810 - Fosmidomycin resistance protein, at 3,237,262 to 3,238,473
_14810
Position (kb)
3233
3234
3235
3236
3237 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3232.942 kb on - strand at 3232.977 kb on + strand at 3232.977 kb on + strand at 3233.490 kb on + strand at 3233.500 kb on + strand at 3233.947 kb on + strand at 3233.947 kb on + strand at 3233.955 kb on + strand at 3233.956 kb on - strand at 3234.151 kb on + strand, within PS417_14800 at 3234.152 kb on - strand, within PS417_14800 at 3234.558 kb on - strand, within PS417_14800 at 3234.772 kb on - strand, within PS417_14800 at 3234.776 kb on - strand at 3234.929 kb on - strand, within PS417_14800 at 3235.311 kb on - strand at 3235.332 kb on + strand, within PS417_14800 at 3235.333 kb on - strand, within PS417_14800 at 3235.379 kb on + strand, within PS417_14800 at 3235.379 kb on + strand, within PS417_14800 at 3235.527 kb on + strand at 3236.016 kb on - strand, within PS417_14800 at 3236.062 kb on + strand, within PS417_14800 at 3236.062 kb on + strand, within PS417_14800 at 3236.564 kb on + strand, within PS417_14805 at 3236.565 kb on - strand, within PS417_14805 at 3237.176 kb on + strand at 3237.249 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,232,942 - -0.7 3,232,977 + +1.7 3,232,977 + -1.0 3,233,490 + -0.1 3,233,500 + -2.6 3,233,947 + -0.0 3,233,947 + -0.1 3,233,955 + +0.1 3,233,956 - -0.6 3,234,151 + PS417_14800 0.15 -0.0 3,234,152 - PS417_14800 0.15 -1.4 3,234,558 - PS417_14800 0.31 -0.5 3,234,772 - PS417_14800 0.39 -0.7 3,234,776 - +0.8 3,234,929 - PS417_14800 0.45 +0.2 3,235,311 - +1.9 3,235,332 + PS417_14800 0.61 -0.5 3,235,333 - PS417_14800 0.61 -1.6 3,235,379 + PS417_14800 0.62 -1.5 3,235,379 + PS417_14800 0.62 -0.6 3,235,527 + +3.8 3,236,016 - PS417_14800 0.87 +0.4 3,236,062 + PS417_14800 0.89 -0.3 3,236,062 + PS417_14800 0.89 +0.4 3,236,564 + PS417_14805 0.27 -0.4 3,236,565 - PS417_14805 0.27 +1.7 3,237,176 + -0.2 3,237,249 - -0.4
Or see this region's nucleotide sequence