Strain Fitness in Pseudomonas simiae WCS417 around PS417_13345

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13340 and PS417_13345 are separated by 10 nucleotidesPS417_13345 and PS417_13350 are separated by 39 nucleotidesPS417_13350 and PS417_13355 are separated by 61 nucleotides PS417_13340: PS417_13340 - hypothetical protein, at 2,932,507 to 2,933,664 _13340 PS417_13345: PS417_13345 - MFS transporter permease, at 2,933,675 to 2,935,054 _13345 PS417_13350: PS417_13350 - phytanoyl-CoA dioxygenase, at 2,935,094 to 2,935,924 _13350 PS417_13355: PS417_13355 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 2,935,986 to 2,936,369 _13355 Position (kb) 2933 2934 2935 2936Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2932.686 kb on - strand, within PS417_13340at 2932.932 kb on + strand, within PS417_13340at 2933.050 kb on + strand, within PS417_13340at 2933.163 kb on + strand, within PS417_13340at 2933.164 kb on - strand, within PS417_13340at 2933.164 kb on - strand, within PS417_13340at 2933.167 kb on + strand, within PS417_13340at 2933.167 kb on + strand, within PS417_13340at 2933.168 kb on - strand, within PS417_13340at 2933.168 kb on - strand, within PS417_13340at 2933.168 kb on - strand, within PS417_13340at 2933.311 kb on + strandat 2933.831 kb on + strand, within PS417_13345at 2934.311 kb on + strand, within PS417_13345at 2934.586 kb on + strand, within PS417_13345at 2934.586 kb on + strand, within PS417_13345at 2934.735 kb on - strand, within PS417_13345at 2935.434 kb on - strand, within PS417_13350at 2935.540 kb on + strand, within PS417_13350at 2935.541 kb on - strand, within PS417_13350at 2935.777 kb on + strand, within PS417_13350at 2935.778 kb on - strand, within PS417_13350at 2935.796 kb on + strand, within PS417_13350at 2935.796 kb on + strand, within PS417_13350at 2935.797 kb on - strand, within PS417_13350at 2935.996 kb on + strandat 2935.996 kb on + strandat 2935.996 kb on + strandat 2935.996 kb on + strandat 2935.996 kb on + strandat 2935.996 kb on + strandat 2935.996 kb on + strandat 2935.996 kb on + strandat 2935.997 kb on - strandat 2935.997 kb on - strandat 2935.997 kb on - strandat 2935.997 kb on - strandat 2935.998 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,932,686 - PS417_13340 0.15 -1.3
2,932,932 + PS417_13340 0.37 +0.1
2,933,050 + PS417_13340 0.47 +0.4
2,933,163 + PS417_13340 0.57 -0.8
2,933,164 - PS417_13340 0.57 -4.4
2,933,164 - PS417_13340 0.57 +0.2
2,933,167 + PS417_13340 0.57 -1.5
2,933,167 + PS417_13340 0.57 +0.2
2,933,168 - PS417_13340 0.57 +2.0
2,933,168 - PS417_13340 0.57 +2.5
2,933,168 - PS417_13340 0.57 -0.4
2,933,311 + -0.5
2,933,831 + PS417_13345 0.11 -0.9
2,934,311 + PS417_13345 0.46 -2.4
2,934,586 + PS417_13345 0.66 -0.9
2,934,586 + PS417_13345 0.66 +0.1
2,934,735 - PS417_13345 0.77 -0.8
2,935,434 - PS417_13350 0.41 +0.7
2,935,540 + PS417_13350 0.54 +0.5
2,935,541 - PS417_13350 0.54 +0.8
2,935,777 + PS417_13350 0.82 -2.1
2,935,778 - PS417_13350 0.82 -2.2
2,935,796 + PS417_13350 0.84 -1.2
2,935,796 + PS417_13350 0.84 -0.4
2,935,797 - PS417_13350 0.85 +3.5
2,935,996 + +1.0
2,935,996 + -0.3
2,935,996 + +0.4
2,935,996 + +0.5
2,935,996 + -0.7
2,935,996 + +0.8
2,935,996 + +0.7
2,935,996 + +2.3
2,935,997 - -0.4
2,935,997 - +0.2
2,935,997 - +0.3
2,935,997 - +0.3
2,935,998 + +1.2

Or see this region's nucleotide sequence