Strain Fitness in Pseudomonas simiae WCS417 around PS417_11975

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11965 and PS417_11970 are separated by 4 nucleotidesPS417_11970 and PS417_11975 are separated by 269 nucleotidesPS417_11975 and PS417_11980 are separated by 250 nucleotidesPS417_11980 and PS417_11990 are separated by 350 nucleotides PS417_11965: PS417_11965 - GCN5 family acetyltransferase, at 2,604,922 to 2,605,368 _11965 PS417_11970: PS417_11970 - hypothetical protein, at 2,605,373 to 2,605,612 _11970 PS417_11975: PS417_11975 - diguanylate cyclase, at 2,605,882 to 2,606,826 _11975 PS417_11980: PS417_11980 - hypothetical protein, at 2,607,077 to 2,607,325 _11980 PS417_11990: PS417_11990 - hypothetical protein, at 2,607,676 to 2,607,987 _11990 Position (kb) 2605 2606 2607Strain fitness (log2 ratio) -2 -1 0 1 2at 2604.884 kb on - strandat 2604.884 kb on - strandat 2604.892 kb on - strandat 2605.172 kb on - strand, within PS417_11965at 2605.223 kb on + strand, within PS417_11965at 2605.676 kb on + strandat 2605.785 kb on - strandat 2605.813 kb on - strandat 2605.845 kb on - strandat 2605.938 kb on - strandat 2606.203 kb on - strandat 2606.203 kb on - strand, within PS417_11975at 2606.239 kb on - strand, within PS417_11975at 2606.258 kb on + strand, within PS417_11975at 2606.259 kb on - strand, within PS417_11975at 2606.302 kb on + strand, within PS417_11975at 2606.396 kb on + strand, within PS417_11975at 2606.534 kb on + strand, within PS417_11975at 2606.535 kb on - strand, within PS417_11975at 2606.619 kb on - strand, within PS417_11975at 2606.619 kb on - strand, within PS417_11975at 2606.619 kb on - strand, within PS417_11975at 2606.717 kb on + strand, within PS417_11975at 2606.718 kb on - strand, within PS417_11975at 2606.718 kb on - strand, within PS417_11975at 2606.718 kb on - strandat 2606.718 kb on - strand, within PS417_11975at 2606.718 kb on - strand, within PS417_11975at 2606.786 kb on + strandat 2606.786 kb on + strandat 2606.787 kb on - strandat 2607.024 kb on + strandat 2607.024 kb on + strandat 2607.025 kb on - strandat 2607.025 kb on - strandat 2607.025 kb on - strandat 2607.025 kb on - strandat 2607.025 kb on - strandat 2607.025 kb on - strandat 2607.365 kb on + strandat 2607.365 kb on + strandat 2607.446 kb on + strandat 2607.587 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,604,884 - -1.1
2,604,884 - -0.5
2,604,892 - +1.4
2,605,172 - PS417_11965 0.56 +1.0
2,605,223 + PS417_11965 0.67 -0.0
2,605,676 + -1.9
2,605,785 - -0.8
2,605,813 - -0.1
2,605,845 - -0.9
2,605,938 - -0.5
2,606,203 - -0.5
2,606,203 - PS417_11975 0.34 -0.8
2,606,239 - PS417_11975 0.38 -0.1
2,606,258 + PS417_11975 0.40 +0.2
2,606,259 - PS417_11975 0.40 +0.9
2,606,302 + PS417_11975 0.44 +0.8
2,606,396 + PS417_11975 0.54 +0.8
2,606,534 + PS417_11975 0.69 +0.5
2,606,535 - PS417_11975 0.69 -0.1
2,606,619 - PS417_11975 0.78 +1.3
2,606,619 - PS417_11975 0.78 -1.8
2,606,619 - PS417_11975 0.78 +1.6
2,606,717 + PS417_11975 0.88 +0.9
2,606,718 - PS417_11975 0.88 -0.5
2,606,718 - PS417_11975 0.88 -0.7
2,606,718 - -0.9
2,606,718 - PS417_11975 0.88 +1.6
2,606,718 - PS417_11975 0.88 +0.5
2,606,786 + +2.4
2,606,786 + +0.3
2,606,787 - +0.3
2,607,024 + -0.3
2,607,024 + -0.7
2,607,025 - -1.2
2,607,025 - +0.9
2,607,025 - -0.1
2,607,025 - -0.4
2,607,025 - -0.5
2,607,025 - -0.2
2,607,365 + -0.6
2,607,365 + +0.4
2,607,446 + -0.5
2,607,587 - -0.3

Or see this region's nucleotide sequence