Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11965 and PS417_11970 are separated by 4 nucleotides PS417_11970 and PS417_11975 are separated by 269 nucleotides PS417_11975 and PS417_11980 are separated by 250 nucleotides PS417_11980 and PS417_11990 are separated by 350 nucleotides
PS417_11965: PS417_11965 - GCN5 family acetyltransferase, at 2,604,922 to 2,605,368
_11965
PS417_11970: PS417_11970 - hypothetical protein, at 2,605,373 to 2,605,612
_11970
PS417_11975: PS417_11975 - diguanylate cyclase, at 2,605,882 to 2,606,826
_11975
PS417_11980: PS417_11980 - hypothetical protein, at 2,607,077 to 2,607,325
_11980
PS417_11990: PS417_11990 - hypothetical protein, at 2,607,676 to 2,607,987
_11990
Position (kb)
2605
2606
2607 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2604.884 kb on - strand at 2604.884 kb on - strand at 2604.892 kb on - strand at 2605.172 kb on - strand, within PS417_11965 at 2605.223 kb on + strand, within PS417_11965 at 2605.676 kb on + strand at 2605.785 kb on - strand at 2605.813 kb on - strand at 2605.845 kb on - strand at 2605.938 kb on - strand at 2606.203 kb on - strand at 2606.203 kb on - strand, within PS417_11975 at 2606.239 kb on - strand, within PS417_11975 at 2606.258 kb on + strand, within PS417_11975 at 2606.259 kb on - strand, within PS417_11975 at 2606.302 kb on + strand, within PS417_11975 at 2606.396 kb on + strand, within PS417_11975 at 2606.534 kb on + strand, within PS417_11975 at 2606.535 kb on - strand, within PS417_11975 at 2606.619 kb on - strand, within PS417_11975 at 2606.619 kb on - strand, within PS417_11975 at 2606.619 kb on - strand, within PS417_11975 at 2606.717 kb on + strand, within PS417_11975 at 2606.718 kb on - strand, within PS417_11975 at 2606.718 kb on - strand, within PS417_11975 at 2606.718 kb on - strand at 2606.718 kb on - strand, within PS417_11975 at 2606.718 kb on - strand, within PS417_11975 at 2606.786 kb on + strand at 2606.786 kb on + strand at 2606.787 kb on - strand at 2607.024 kb on + strand at 2607.024 kb on + strand at 2607.025 kb on - strand at 2607.025 kb on - strand at 2607.025 kb on - strand at 2607.025 kb on - strand at 2607.025 kb on - strand at 2607.025 kb on - strand at 2607.365 kb on + strand at 2607.365 kb on + strand at 2607.446 kb on + strand at 2607.587 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,604,884 - -1.1 2,604,884 - -0.5 2,604,892 - +1.4 2,605,172 - PS417_11965 0.56 +1.0 2,605,223 + PS417_11965 0.67 -0.0 2,605,676 + -1.9 2,605,785 - -0.8 2,605,813 - -0.1 2,605,845 - -0.9 2,605,938 - -0.5 2,606,203 - -0.5 2,606,203 - PS417_11975 0.34 -0.8 2,606,239 - PS417_11975 0.38 -0.1 2,606,258 + PS417_11975 0.40 +0.2 2,606,259 - PS417_11975 0.40 +0.9 2,606,302 + PS417_11975 0.44 +0.8 2,606,396 + PS417_11975 0.54 +0.8 2,606,534 + PS417_11975 0.69 +0.5 2,606,535 - PS417_11975 0.69 -0.1 2,606,619 - PS417_11975 0.78 +1.3 2,606,619 - PS417_11975 0.78 -1.8 2,606,619 - PS417_11975 0.78 +1.6 2,606,717 + PS417_11975 0.88 +0.9 2,606,718 - PS417_11975 0.88 -0.5 2,606,718 - PS417_11975 0.88 -0.7 2,606,718 - -0.9 2,606,718 - PS417_11975 0.88 +1.6 2,606,718 - PS417_11975 0.88 +0.5 2,606,786 + +2.4 2,606,786 + +0.3 2,606,787 - +0.3 2,607,024 + -0.3 2,607,024 + -0.7 2,607,025 - -1.2 2,607,025 - +0.9 2,607,025 - -0.1 2,607,025 - -0.4 2,607,025 - -0.5 2,607,025 - -0.2 2,607,365 + -0.6 2,607,365 + +0.4 2,607,446 + -0.5 2,607,587 - -0.3
Or see this region's nucleotide sequence