Strain Fitness in Pseudomonas simiae WCS417 around PS417_10075

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10065 and PS417_10070 are separated by 30 nucleotidesPS417_10070 and PS417_10075 overlap by 14 nucleotidesPS417_10075 and PS417_10080 overlap by 4 nucleotides PS417_10065: PS417_10065 - hypothetical protein, at 2,159,956 to 2,160,579 _10065 PS417_10070: PS417_10070 - hypothetical protein, at 2,160,610 to 2,161,071 _10070 PS417_10075: PS417_10075 - terminase, at 2,161,058 to 2,162,359 _10075 PS417_10080: PS417_10080 - hypothetical protein, at 2,162,356 to 2,163,774 _10080 Position (kb) 2161 2162 2163Strain fitness (log2 ratio) -2 -1 0 1 2at 2160.084 kb on + strandat 2160.084 kb on + strand, within PS417_10065at 2160.110 kb on + strand, within PS417_10065at 2160.350 kb on - strand, within PS417_10065at 2160.350 kb on - strand, within PS417_10065at 2160.376 kb on + strandat 2160.376 kb on + strand, within PS417_10065at 2160.377 kb on - strand, within PS417_10065at 2160.377 kb on - strand, within PS417_10065at 2160.377 kb on - strand, within PS417_10065at 2160.593 kb on - strandat 2160.642 kb on + strandat 2160.912 kb on + strand, within PS417_10070at 2160.913 kb on - strand, within PS417_10070at 2160.967 kb on + strand, within PS417_10070at 2160.967 kb on + strand, within PS417_10070at 2160.967 kb on + strand, within PS417_10070at 2160.967 kb on + strand, within PS417_10070at 2160.968 kb on - strand, within PS417_10070at 2160.968 kb on - strand, within PS417_10070at 2161.070 kb on - strandat 2161.198 kb on + strand, within PS417_10075at 2161.208 kb on + strand, within PS417_10075at 2161.208 kb on + strand, within PS417_10075at 2161.223 kb on + strand, within PS417_10075at 2161.326 kb on - strand, within PS417_10075at 2161.326 kb on - strand, within PS417_10075at 2161.526 kb on - strand, within PS417_10075at 2161.604 kb on + strand, within PS417_10075at 2161.604 kb on + strand, within PS417_10075at 2161.604 kb on + strand, within PS417_10075at 2161.658 kb on + strand, within PS417_10075at 2161.658 kb on + strand, within PS417_10075at 2161.706 kb on + strand, within PS417_10075at 2161.706 kb on + strand, within PS417_10075at 2161.748 kb on + strand, within PS417_10075at 2161.749 kb on - strand, within PS417_10075at 2161.749 kb on - strand, within PS417_10075at 2161.757 kb on + strand, within PS417_10075at 2162.202 kb on - strand, within PS417_10075at 2162.291 kb on + strandat 2162.580 kb on - strand, within PS417_10080at 2162.627 kb on - strand, within PS417_10080at 2162.665 kb on + strand, within PS417_10080at 2162.722 kb on + strand, within PS417_10080at 2162.723 kb on - strand, within PS417_10080at 2162.731 kb on + strand, within PS417_10080at 2162.732 kb on - strand, within PS417_10080at 2162.812 kb on - strand, within PS417_10080at 2162.812 kb on - strand, within PS417_10080at 2162.832 kb on - strand, within PS417_10080at 2162.953 kb on - strand, within PS417_10080at 2162.953 kb on - strand, within PS417_10080at 2163.094 kb on + strand, within PS417_10080at 2163.095 kb on - strand, within PS417_10080at 2163.221 kb on - strand, within PS417_10080at 2163.235 kb on + strand, within PS417_10080

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,160,084 + -0.6
2,160,084 + PS417_10065 0.21 -2.2
2,160,110 + PS417_10065 0.25 -1.0
2,160,350 - PS417_10065 0.63 -0.3
2,160,350 - PS417_10065 0.63 +0.1
2,160,376 + -2.1
2,160,376 + PS417_10065 0.67 -0.1
2,160,377 - PS417_10065 0.67 -0.6
2,160,377 - PS417_10065 0.67 +0.7
2,160,377 - PS417_10065 0.67 -0.1
2,160,593 - +1.6
2,160,642 + -1.4
2,160,912 + PS417_10070 0.65 -1.9
2,160,913 - PS417_10070 0.66 -0.3
2,160,967 + PS417_10070 0.77 +0.4
2,160,967 + PS417_10070 0.77 +0.2
2,160,967 + PS417_10070 0.77 -0.4
2,160,967 + PS417_10070 0.77 -0.0
2,160,968 - PS417_10070 0.77 -0.5
2,160,968 - PS417_10070 0.77 -0.5
2,161,070 - -0.5
2,161,198 + PS417_10075 0.11 -0.3
2,161,208 + PS417_10075 0.12 +0.4
2,161,208 + PS417_10075 0.12 -0.0
2,161,223 + PS417_10075 0.13 -0.4
2,161,326 - PS417_10075 0.21 +0.2
2,161,326 - PS417_10075 0.21 -1.3
2,161,526 - PS417_10075 0.36 -1.1
2,161,604 + PS417_10075 0.42 -0.3
2,161,604 + PS417_10075 0.42 -1.4
2,161,604 + PS417_10075 0.42 -2.2
2,161,658 + PS417_10075 0.46 +0.4
2,161,658 + PS417_10075 0.46 +0.5
2,161,706 + PS417_10075 0.50 -0.2
2,161,706 + PS417_10075 0.50 -1.2
2,161,748 + PS417_10075 0.53 -0.9
2,161,749 - PS417_10075 0.53 -1.9
2,161,749 - PS417_10075 0.53 +0.9
2,161,757 + PS417_10075 0.54 -1.4
2,162,202 - PS417_10075 0.88 +0.4
2,162,291 + +0.3
2,162,580 - PS417_10080 0.16 -0.6
2,162,627 - PS417_10080 0.19 -0.1
2,162,665 + PS417_10080 0.22 +1.6
2,162,722 + PS417_10080 0.26 +0.0
2,162,723 - PS417_10080 0.26 -0.6
2,162,731 + PS417_10080 0.26 -1.5
2,162,732 - PS417_10080 0.26 +0.5
2,162,812 - PS417_10080 0.32 +2.6
2,162,812 - PS417_10080 0.32 +0.2
2,162,832 - PS417_10080 0.34 +0.4
2,162,953 - PS417_10080 0.42 +0.3
2,162,953 - PS417_10080 0.42 -0.1
2,163,094 + PS417_10080 0.52 +0.1
2,163,095 - PS417_10080 0.52 -2.6
2,163,221 - PS417_10080 0.61 -1.5
2,163,235 + PS417_10080 0.62 -0.0

Or see this region's nucleotide sequence