Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09165 and PS417_09170 overlap by 4 nucleotides PS417_09170 and PS417_09175 are separated by 89 nucleotides
PS417_09165: PS417_09165 - alkaline phosphatase, at 1,991,664 to 1,993,238
_09165
PS417_09170: PS417_09170 - alanyl-tRNA synthetase, at 1,993,235 to 1,993,861
_09170
PS417_09175: PS417_09175 - transcriptional regulator, at 1,993,951 to 1,994,895
_09175
Position (kb)
1993
1994 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1992.313 kb on - strand, within PS417_09165 at 1992.396 kb on + strand, within PS417_09165 at 1992.396 kb on + strand, within PS417_09165 at 1992.397 kb on - strand, within PS417_09165 at 1992.397 kb on - strand, within PS417_09165 at 1992.474 kb on + strand, within PS417_09165 at 1992.475 kb on - strand, within PS417_09165 at 1992.478 kb on - strand, within PS417_09165 at 1992.486 kb on - strand at 1992.486 kb on - strand, within PS417_09165 at 1992.486 kb on - strand, within PS417_09165 at 1992.641 kb on + strand, within PS417_09165 at 1992.641 kb on + strand, within PS417_09165 at 1992.642 kb on - strand, within PS417_09165 at 1992.843 kb on + strand, within PS417_09165 at 1992.843 kb on + strand, within PS417_09165 at 1992.843 kb on + strand, within PS417_09165 at 1992.843 kb on + strand, within PS417_09165 at 1992.844 kb on - strand, within PS417_09165 at 1993.098 kb on + strand at 1993.656 kb on + strand, within PS417_09170 at 1993.656 kb on + strand, within PS417_09170 at 1993.656 kb on + strand, within PS417_09170 at 1993.656 kb on + strand, within PS417_09170 at 1993.657 kb on - strand, within PS417_09170 at 1993.657 kb on - strand at 1993.657 kb on - strand, within PS417_09170 at 1993.695 kb on - strand, within PS417_09170 at 1993.815 kb on - strand at 1993.866 kb on + strand at 1993.866 kb on + strand at 1993.866 kb on + strand at 1993.867 kb on - strand at 1993.867 kb on - strand at 1993.867 kb on - strand at 1993.897 kb on - strand at 1994.539 kb on + strand, within PS417_09175 at 1994.819 kb on + strand at 1994.825 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,992,313 - PS417_09165 0.41 -0.1 1,992,396 + PS417_09165 0.46 -0.6 1,992,396 + PS417_09165 0.46 +2.1 1,992,397 - PS417_09165 0.47 +1.7 1,992,397 - PS417_09165 0.47 -2.7 1,992,474 + PS417_09165 0.51 +0.9 1,992,475 - PS417_09165 0.51 +1.6 1,992,478 - PS417_09165 0.52 +0.6 1,992,486 - +2.5 1,992,486 - PS417_09165 0.52 +0.1 1,992,486 - PS417_09165 0.52 +0.3 1,992,641 + PS417_09165 0.62 -0.1 1,992,641 + PS417_09165 0.62 -1.0 1,992,642 - PS417_09165 0.62 -2.1 1,992,843 + PS417_09165 0.75 -0.6 1,992,843 + PS417_09165 0.75 -3.2 1,992,843 + PS417_09165 0.75 -1.1 1,992,843 + PS417_09165 0.75 -1.1 1,992,844 - PS417_09165 0.75 -0.8 1,993,098 + -2.5 1,993,656 + PS417_09170 0.67 +0.0 1,993,656 + PS417_09170 0.67 -0.4 1,993,656 + PS417_09170 0.67 +1.2 1,993,656 + PS417_09170 0.67 -0.8 1,993,657 - PS417_09170 0.67 -0.3 1,993,657 - +0.9 1,993,657 - PS417_09170 0.67 -0.1 1,993,695 - PS417_09170 0.73 +0.5 1,993,815 - +0.4 1,993,866 + +0.0 1,993,866 + +0.3 1,993,866 + -1.6 1,993,867 - -1.7 1,993,867 - -1.3 1,993,867 - +0.9 1,993,897 - +0.5 1,994,539 + PS417_09175 0.62 +2.1 1,994,819 + +0.3 1,994,825 + +0.2
Or see this region's nucleotide sequence