Strain Fitness in Pseudomonas simiae WCS417 around PS417_08615

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08610 and PS417_08615 are separated by 71 nucleotidesPS417_08615 and PS417_08620 are separated by 91 nucleotidesPS417_08620 and PS417_08625 overlap by 4 nucleotidesPS417_08625 and PS417_08630 are separated by 2 nucleotides PS417_08610: PS417_08610 - deoxyguanosinetriphosphate triphosphohydrolase, at 1,881,572 to 1,882,903 _08610 PS417_08615: PS417_08615 - diguanylate phosphodiesterase, at 1,882,975 to 1,884,138 _08615 PS417_08620: PS417_08620 - hypothetical protein, at 1,884,230 to 1,884,571 _08620 PS417_08625: PS417_08625 - membrane protein, at 1,884,568 to 1,884,951 _08625 PS417_08630: PS417_08630 - membrane protein, at 1,884,954 to 1,885,268 _08630 Position (kb) 1882 1883 1884 1885Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1882.171 kb on - strand, within PS417_08610at 1882.177 kb on + strand, within PS417_08610at 1882.178 kb on - strand, within PS417_08610at 1882.200 kb on + strand, within PS417_08610at 1882.200 kb on + strand, within PS417_08610at 1882.200 kb on + strand, within PS417_08610at 1882.380 kb on + strand, within PS417_08610at 1882.380 kb on + strand, within PS417_08610at 1882.380 kb on + strand, within PS417_08610at 1882.381 kb on - strand, within PS417_08610at 1882.381 kb on - strand, within PS417_08610at 1882.381 kb on - strand, within PS417_08610at 1882.414 kb on - strand, within PS417_08610at 1882.487 kb on - strand, within PS417_08610at 1882.801 kb on + strandat 1882.801 kb on + strandat 1882.801 kb on + strandat 1882.802 kb on - strandat 1882.804 kb on + strandat 1882.804 kb on + strandat 1882.804 kb on + strandat 1882.804 kb on + strandat 1883.051 kb on + strandat 1883.052 kb on - strandat 1883.130 kb on - strand, within PS417_08615at 1883.136 kb on - strand, within PS417_08615at 1883.244 kb on - strand, within PS417_08615at 1883.475 kb on - strand, within PS417_08615at 1883.482 kb on + strand, within PS417_08615at 1883.483 kb on - strand, within PS417_08615at 1883.483 kb on - strand, within PS417_08615at 1883.483 kb on - strand, within PS417_08615at 1884.149 kb on + strandat 1884.149 kb on + strandat 1884.150 kb on - strandat 1884.421 kb on + strand, within PS417_08620at 1884.686 kb on + strand, within PS417_08625at 1884.687 kb on - strand, within PS417_08625

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,882,171 - PS417_08610 0.45 -0.2
1,882,177 + PS417_08610 0.45 +0.2
1,882,178 - PS417_08610 0.45 -0.6
1,882,200 + PS417_08610 0.47 +0.1
1,882,200 + PS417_08610 0.47 +2.5
1,882,200 + PS417_08610 0.47 -1.5
1,882,380 + PS417_08610 0.61 +1.6
1,882,380 + PS417_08610 0.61 +1.7
1,882,380 + PS417_08610 0.61 +0.9
1,882,381 - PS417_08610 0.61 -0.8
1,882,381 - PS417_08610 0.61 -2.0
1,882,381 - PS417_08610 0.61 -2.4
1,882,414 - PS417_08610 0.63 -0.3
1,882,487 - PS417_08610 0.69 +0.7
1,882,801 + +1.3
1,882,801 + +0.7
1,882,801 + -1.2
1,882,802 - -0.0
1,882,804 + +1.6
1,882,804 + -0.0
1,882,804 + -1.5
1,882,804 + -1.3
1,883,051 + -0.3
1,883,052 - +0.8
1,883,130 - PS417_08615 0.13 -1.0
1,883,136 - PS417_08615 0.14 -3.2
1,883,244 - PS417_08615 0.23 -1.6
1,883,475 - PS417_08615 0.43 -0.6
1,883,482 + PS417_08615 0.44 +0.4
1,883,483 - PS417_08615 0.44 -0.1
1,883,483 - PS417_08615 0.44 -1.4
1,883,483 - PS417_08615 0.44 -1.5
1,884,149 + -0.7
1,884,149 + -1.1
1,884,150 - +1.1
1,884,421 + PS417_08620 0.56 -0.4
1,884,686 + PS417_08625 0.31 -3.9
1,884,687 - PS417_08625 0.31 -1.1

Or see this region's nucleotide sequence