Experiment: Growth at 30C; with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4813 and PP_4814 are separated by 111 nucleotides PP_4814 and PP_4815 are separated by 6 nucleotides PP_4815 and PP_4816 overlap by 4 nucleotides
PP_4813: PP_4813 - PAP2 family protein/DedA family protein, at 5,475,771 to 5,477,087
_4813
PP_4814: PP_4814 - ATP-dependent protease La domain protein, at 5,477,199 to 5,477,792
_4814
PP_4815: PP_4815 - putative Membrane protein, at 5,477,799 to 5,478,515
_4815
PP_4816: PP_4816 - conserved protein of unknown function, at 5,478,512 to 5,478,880
_4816
Position (kb) 5477
5478 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5476.243 kb on - strand, within PP_4813 at 5476.243 kb on - strand, within PP_4813 at 5476.322 kb on - strand, within PP_4813 at 5476.322 kb on - strand, within PP_4813 at 5476.433 kb on - strand, within PP_4813 at 5476.433 kb on - strand, within PP_4813 at 5476.449 kb on + strand, within PP_4813 at 5476.449 kb on + strand, within PP_4813 at 5476.450 kb on - strand, within PP_4813 at 5476.450 kb on - strand, within PP_4813 at 5476.678 kb on + strand, within PP_4813 at 5476.678 kb on + strand, within PP_4813 at 5476.679 kb on - strand, within PP_4813 at 5476.703 kb on - strand, within PP_4813 at 5476.725 kb on + strand, within PP_4813 at 5476.725 kb on + strand, within PP_4813 at 5476.726 kb on - strand, within PP_4813 at 5476.726 kb on - strand, within PP_4813 at 5477.076 kb on + strand at 5477.076 kb on + strand at 5477.077 kb on - strand at 5477.077 kb on - strand at 5477.077 kb on - strand at 5477.082 kb on + strand at 5477.083 kb on - strand at 5477.083 kb on - strand at 5477.083 kb on - strand at 5477.106 kb on - strand at 5477.116 kb on - strand at 5477.128 kb on - strand at 5477.145 kb on + strand at 5477.151 kb on - strand at 5477.151 kb on - strand at 5477.190 kb on - strand at 5477.190 kb on - strand at 5477.317 kb on + strand, within PP_4814 at 5477.418 kb on + strand, within PP_4814 at 5477.419 kb on - strand, within PP_4814 at 5477.419 kb on - strand, within PP_4814 at 5477.762 kb on + strand at 5477.841 kb on - strand at 5478.023 kb on + strand, within PP_4815 at 5478.204 kb on - strand, within PP_4815 at 5478.204 kb on - strand, within PP_4815 at 5478.207 kb on - strand, within PP_4815 at 5478.207 kb on - strand, within PP_4815 at 5478.212 kb on + strand, within PP_4815 at 5478.213 kb on - strand, within PP_4815 at 5478.245 kb on + strand, within PP_4815 at 5478.250 kb on + strand, within PP_4815 at 5478.251 kb on - strand, within PP_4815 at 5478.375 kb on + strand, within PP_4815 at 5478.381 kb on + strand, within PP_4815 at 5478.416 kb on - strand, within PP_4815 at 5478.429 kb on + strand, within PP_4815 at 5478.429 kb on + strand, within PP_4815 at 5478.430 kb on - strand, within PP_4815 at 5478.436 kb on + strand, within PP_4815 at 5478.436 kb on + strand, within PP_4815 at 5478.648 kb on + strand, within PP_4816 at 5478.648 kb on + strand, within PP_4816 at 5478.648 kb on + strand, within PP_4816 at 5478.648 kb on + strand, within PP_4816 at 5478.649 kb on - strand, within PP_4816 at 5478.649 kb on - strand, within PP_4816 at 5478.649 kb on - strand, within PP_4816 at 5478.650 kb on + strand, within PP_4816 at 5478.650 kb on + strand, within PP_4816 at 5478.650 kb on + strand, within PP_4816 at 5478.650 kb on + strand, within PP_4816 at 5478.650 kb on + strand, within PP_4816 at 5478.650 kb on + strand, within PP_4816 at 5478.651 kb on - strand, within PP_4816 at 5478.651 kb on - strand, within PP_4816 at 5478.651 kb on - strand, within PP_4816
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at 30C; with MOPS remove 5,476,243 - PP_4813 0.36 -1.5 5,476,243 - PP_4813 0.36 -1.4 5,476,322 - PP_4813 0.42 +0.5 5,476,322 - PP_4813 0.42 +0.0 5,476,433 - PP_4813 0.50 +0.8 5,476,433 - PP_4813 0.50 +0.8 5,476,449 + PP_4813 0.51 -0.7 5,476,449 + PP_4813 0.51 -1.0 5,476,450 - PP_4813 0.52 +0.9 5,476,450 - PP_4813 0.52 -2.6 5,476,678 + PP_4813 0.69 +0.1 5,476,678 + PP_4813 0.69 +1.2 5,476,679 - PP_4813 0.69 -0.6 5,476,703 - PP_4813 0.71 +0.3 5,476,725 + PP_4813 0.72 -0.4 5,476,725 + PP_4813 0.72 -1.6 5,476,726 - PP_4813 0.73 -0.5 5,476,726 - PP_4813 0.73 +0.4 5,477,076 + -0.8 5,477,076 + -0.2 5,477,077 - -0.1 5,477,077 - +1.2 5,477,077 - -0.4 5,477,082 + -0.9 5,477,083 - +0.3 5,477,083 - -1.3 5,477,083 - -0.5 5,477,106 - -0.3 5,477,116 - -0.4 5,477,128 - -3.6 5,477,145 + -0.3 5,477,151 - +0.6 5,477,151 - +1.3 5,477,190 - +0.6 5,477,190 - +0.9 5,477,317 + PP_4814 0.20 -2.6 5,477,418 + PP_4814 0.37 +0.7 5,477,419 - PP_4814 0.37 +1.2 5,477,419 - PP_4814 0.37 +2.8 5,477,762 + -0.4 5,477,841 - -0.9 5,478,023 + PP_4815 0.31 +0.7 5,478,204 - PP_4815 0.56 +0.1 5,478,204 - PP_4815 0.56 -1.7 5,478,207 - PP_4815 0.57 -0.6 5,478,207 - PP_4815 0.57 +0.4 5,478,212 + PP_4815 0.58 +1.3 5,478,213 - PP_4815 0.58 +1.0 5,478,245 + PP_4815 0.62 +1.2 5,478,250 + PP_4815 0.63 +0.6 5,478,251 - PP_4815 0.63 -1.3 5,478,375 + PP_4815 0.80 +0.7 5,478,381 + PP_4815 0.81 -0.2 5,478,416 - PP_4815 0.86 -1.7 5,478,429 + PP_4815 0.88 +0.3 5,478,429 + PP_4815 0.88 +1.0 5,478,430 - PP_4815 0.88 +1.1 5,478,436 + PP_4815 0.89 +1.7 5,478,436 + PP_4815 0.89 +0.4 5,478,648 + PP_4816 0.37 -0.2 5,478,648 + PP_4816 0.37 +0.1 5,478,648 + PP_4816 0.37 -1.7 5,478,648 + PP_4816 0.37 -0.0 5,478,649 - PP_4816 0.37 -0.7 5,478,649 - PP_4816 0.37 -0.8 5,478,649 - PP_4816 0.37 +0.4 5,478,650 + PP_4816 0.37 +0.8 5,478,650 + PP_4816 0.37 +2.8 5,478,650 + PP_4816 0.37 -2.6 5,478,650 + PP_4816 0.37 -0.7 5,478,650 + PP_4816 0.37 +1.7 5,478,650 + PP_4816 0.37 +0.9 5,478,651 - PP_4816 0.38 +0.4 5,478,651 - PP_4816 0.38 -0.2 5,478,651 - PP_4816 0.38 -1.2
Or see this region's nucleotide sequence