Strain Fitness in Pseudomonas simiae WCS417 around PS417_03985

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03980 and PS417_03985 are separated by 99 nucleotidesPS417_03985 and PS417_03990 are separated by 136 nucleotides PS417_03980: PS417_03980 - alkaline phosphatase, at 891,073 to 892,614 _03980 PS417_03985: PS417_03985 - flavodoxin, at 892,714 to 895,239 _03985 PS417_03990: PS417_03990 - ligand-gated channel protein, at 895,376 to 897,661 _03990 Position (kb) 892 893 894 895 896Strain fitness (log2 ratio) -2 -1 0 1 2at 891.733 kb on + strand, within PS417_03980at 891.914 kb on - strand, within PS417_03980at 891.914 kb on - strand, within PS417_03980at 891.973 kb on + strand, within PS417_03980at 891.974 kb on - strand, within PS417_03980at 892.143 kb on + strand, within PS417_03980at 892.158 kb on - strandat 892.172 kb on + strand, within PS417_03980at 892.172 kb on + strand, within PS417_03980at 892.296 kb on - strand, within PS417_03980at 892.318 kb on + strand, within PS417_03980at 892.336 kb on + strand, within PS417_03980at 892.336 kb on + strand, within PS417_03980at 892.529 kb on + strandat 892.530 kb on - strandat 892.530 kb on - strandat 892.530 kb on - strandat 892.530 kb on - strandat 892.530 kb on - strandat 892.663 kb on + strandat 892.777 kb on + strandat 892.777 kb on + strandat 892.778 kb on - strandat 892.778 kb on - strandat 892.778 kb on - strandat 892.835 kb on + strandat 892.835 kb on + strandat 892.836 kb on - strandat 892.836 kb on - strandat 892.863 kb on + strandat 892.864 kb on - strandat 892.864 kb on - strandat 893.301 kb on - strand, within PS417_03985at 893.564 kb on - strand, within PS417_03985at 893.810 kb on + strand, within PS417_03985at 893.811 kb on - strand, within PS417_03985at 893.855 kb on - strand, within PS417_03985at 893.855 kb on - strand, within PS417_03985at 894.251 kb on + strand, within PS417_03985at 894.401 kb on + strand, within PS417_03985at 894.404 kb on + strand, within PS417_03985at 894.405 kb on - strand, within PS417_03985at 894.449 kb on + strand, within PS417_03985at 894.480 kb on - strand, within PS417_03985at 894.480 kb on - strand, within PS417_03985at 894.480 kb on - strand, within PS417_03985at 894.483 kb on + strand, within PS417_03985at 894.503 kb on + strand, within PS417_03985at 894.503 kb on + strandat 894.504 kb on - strand, within PS417_03985at 894.602 kb on + strand, within PS417_03985at 894.602 kb on + strand, within PS417_03985at 894.693 kb on + strand, within PS417_03985at 894.693 kb on + strand, within PS417_03985at 894.693 kb on + strand, within PS417_03985at 894.694 kb on - strand, within PS417_03985at 894.908 kb on + strand, within PS417_03985at 894.908 kb on + strand, within PS417_03985at 894.909 kb on - strand, within PS417_03985at 894.909 kb on - strand, within PS417_03985at 894.920 kb on + strand, within PS417_03985at 895.106 kb on - strandat 895.265 kb on - strandat 895.268 kb on + strandat 895.268 kb on + strandat 895.269 kb on - strandat 895.269 kb on - strandat 895.367 kb on + strandat 895.367 kb on + strandat 895.367 kb on + strandat 895.377 kb on + strandat 895.378 kb on - strandat 895.408 kb on + strandat 895.458 kb on + strandat 895.458 kb on + strandat 895.458 kb on + strandat 895.458 kb on + strandat 895.518 kb on + strandat 895.545 kb on + strandat 895.546 kb on - strandat 895.554 kb on - strandat 895.554 kb on - strandat 895.557 kb on + strandat 895.557 kb on + strandat 895.558 kb on - strandat 895.638 kb on + strand, within PS417_03990at 895.638 kb on + strand, within PS417_03990at 895.761 kb on + strand, within PS417_03990at 895.762 kb on - strand, within PS417_03990at 895.854 kb on + strand, within PS417_03990at 895.854 kb on + strand, within PS417_03990at 896.074 kb on - strand, within PS417_03990at 896.082 kb on + strand, within PS417_03990at 896.082 kb on + strand, within PS417_03990at 896.082 kb on + strand, within PS417_03990at 896.082 kb on + strand, within PS417_03990at 896.082 kb on + strand, within PS417_03990at 896.082 kb on + strand, within PS417_03990at 896.083 kb on - strand, within PS417_03990at 896.083 kb on - strand, within PS417_03990at 896.083 kb on - strand, within PS417_03990at 896.083 kb on - strand, within PS417_03990

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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891,733 + PS417_03980 0.43 -0.6
891,914 - PS417_03980 0.55 -0.7
891,914 - PS417_03980 0.55 +0.2
891,973 + PS417_03980 0.58 +0.1
891,974 - PS417_03980 0.58 -0.4
892,143 + PS417_03980 0.69 -0.2
892,158 - +0.7
892,172 + PS417_03980 0.71 -0.3
892,172 + PS417_03980 0.71 +0.0
892,296 - PS417_03980 0.79 +0.0
892,318 + PS417_03980 0.81 -0.8
892,336 + PS417_03980 0.82 +0.1
892,336 + PS417_03980 0.82 +1.7
892,529 + -0.4
892,530 - -0.0
892,530 - +0.1
892,530 - +0.3
892,530 - -0.2
892,530 - -1.2
892,663 + -0.1
892,777 + -0.1
892,777 + -0.6
892,778 - -0.1
892,778 - +0.2
892,778 - -0.6
892,835 + +0.2
892,835 + -1.2
892,836 - +1.2
892,836 - -0.2
892,863 + +0.8
892,864 - +0.7
892,864 - -0.4
893,301 - PS417_03985 0.23 +0.1
893,564 - PS417_03985 0.34 -0.3
893,810 + PS417_03985 0.43 +0.4
893,811 - PS417_03985 0.43 -0.7
893,855 - PS417_03985 0.45 +0.9
893,855 - PS417_03985 0.45 -0.1
894,251 + PS417_03985 0.61 +0.8
894,401 + PS417_03985 0.67 +0.1
894,404 + PS417_03985 0.67 +0.4
894,405 - PS417_03985 0.67 +0.2
894,449 + PS417_03985 0.69 +1.7
894,480 - PS417_03985 0.70 -0.1
894,480 - PS417_03985 0.70 -1.1
894,480 - PS417_03985 0.70 -1.3
894,483 + PS417_03985 0.70 +0.2
894,503 + PS417_03985 0.71 -0.5
894,503 + -0.6
894,504 - PS417_03985 0.71 +0.7
894,602 + PS417_03985 0.75 -0.8
894,602 + PS417_03985 0.75 +0.2
894,693 + PS417_03985 0.78 +0.8
894,693 + PS417_03985 0.78 +0.6
894,693 + PS417_03985 0.78 -0.6
894,694 - PS417_03985 0.78 +0.6
894,908 + PS417_03985 0.87 +0.1
894,908 + PS417_03985 0.87 -0.1
894,909 - PS417_03985 0.87 +0.2
894,909 - PS417_03985 0.87 -1.0
894,920 + PS417_03985 0.87 -0.3
895,106 - -0.2
895,265 - -1.4
895,268 + +1.1
895,268 + +0.3
895,269 - +0.4
895,269 - +0.4
895,367 + +2.4
895,367 + +0.2
895,367 + -0.2
895,377 + -0.3
895,378 - -1.1
895,408 + -1.3
895,458 + -1.0
895,458 + +1.4
895,458 + -0.5
895,458 + +0.8
895,518 + -0.1
895,545 + +0.1
895,546 - +0.1
895,554 - -0.1
895,554 - +0.1
895,557 + -0.2
895,557 + -1.0
895,558 - +0.4
895,638 + PS417_03990 0.11 +0.0
895,638 + PS417_03990 0.11 +0.3
895,761 + PS417_03990 0.17 +0.7
895,762 - PS417_03990 0.17 +0.5
895,854 + PS417_03990 0.21 -0.1
895,854 + PS417_03990 0.21 -0.2
896,074 - PS417_03990 0.31 +0.1
896,082 + PS417_03990 0.31 -0.0
896,082 + PS417_03990 0.31 +0.1
896,082 + PS417_03990 0.31 -0.3
896,082 + PS417_03990 0.31 -0.4
896,082 + PS417_03990 0.31 +0.5
896,082 + PS417_03990 0.31 -0.3
896,083 - PS417_03990 0.31 -0.2
896,083 - PS417_03990 0.31 -0.2
896,083 - PS417_03990 0.31 +0.1
896,083 - PS417_03990 0.31 -1.8

Or see this region's nucleotide sequence