Strain Fitness in Pseudomonas putida KT2440 around PP_5561

Experiment: Growth at 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3090 and PP_5561 overlap by 4 nucleotidesPP_5561 and PP_3091 overlap by 4 nucleotides PP_3090: PP_3090 - OmpA domain protein, at 3,478,723 to 3,481,218 _3090 PP_5561: PP_5561 - conserved protein of unknown function, at 3,481,215 to 3,482,123 _5561 PP_3091: PP_3091 - conserved membrane protein of unknown function, at 3,482,120 to 3,485,923 _3091 Position (kb) 3481 3482 3483Strain fitness (log2 ratio) -2 -1 0 1 2at 3480.244 kb on + strand, within PP_3090at 3480.244 kb on + strand, within PP_3090at 3480.244 kb on + strand, within PP_3090at 3480.244 kb on + strand, within PP_3090at 3480.244 kb on + strand, within PP_3090at 3480.244 kb on + strand, within PP_3090at 3480.244 kb on + strand, within PP_3090at 3480.245 kb on - strand, within PP_3090at 3480.245 kb on - strand, within PP_3090at 3480.366 kb on + strand, within PP_3090at 3480.407 kb on + strand, within PP_3090at 3480.668 kb on + strand, within PP_3090at 3480.839 kb on + strand, within PP_3090at 3480.854 kb on + strand, within PP_3090at 3480.854 kb on + strand, within PP_3090at 3480.854 kb on + strand, within PP_3090at 3480.854 kb on + strand, within PP_3090at 3480.854 kb on + strand, within PP_3090at 3480.855 kb on - strand, within PP_3090at 3480.855 kb on - strand, within PP_3090at 3480.855 kb on - strand, within PP_3090at 3481.048 kb on + strandat 3481.048 kb on + strandat 3481.048 kb on + strandat 3481.048 kb on + strandat 3481.048 kb on + strandat 3481.048 kb on + strandat 3481.052 kb on + strandat 3481.052 kb on + strandat 3481.053 kb on - strandat 3481.053 kb on - strandat 3481.178 kb on + strandat 3481.178 kb on + strandat 3481.178 kb on + strandat 3481.179 kb on - strandat 3481.179 kb on - strandat 3481.199 kb on + strandat 3481.199 kb on + strandat 3481.199 kb on + strandat 3481.203 kb on - strandat 3481.218 kb on + strandat 3481.280 kb on - strandat 3481.396 kb on + strand, within PP_5561at 3481.396 kb on + strand, within PP_5561at 3481.506 kb on - strand, within PP_5561at 3481.506 kb on - strand, within PP_5561at 3481.841 kb on + strand, within PP_5561at 3481.841 kb on + strand, within PP_5561at 3481.952 kb on - strand, within PP_5561at 3482.430 kb on + strandat 3482.612 kb on + strand, within PP_3091at 3482.613 kb on - strand, within PP_3091at 3482.690 kb on + strand, within PP_3091at 3482.690 kb on + strand, within PP_3091at 3482.690 kb on + strand, within PP_3091at 3482.691 kb on - strand, within PP_3091at 3482.847 kb on + strand, within PP_3091

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 30C
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3,480,244 + PP_3090 0.61 -1.3
3,480,244 + PP_3090 0.61 -0.4
3,480,244 + PP_3090 0.61 -1.1
3,480,244 + PP_3090 0.61 +0.3
3,480,244 + PP_3090 0.61 +0.5
3,480,244 + PP_3090 0.61 +2.5
3,480,244 + PP_3090 0.61 +1.0
3,480,245 - PP_3090 0.61 -0.8
3,480,245 - PP_3090 0.61 +0.9
3,480,366 + PP_3090 0.66 -0.2
3,480,407 + PP_3090 0.67 +1.1
3,480,668 + PP_3090 0.78 +0.6
3,480,839 + PP_3090 0.85 -1.0
3,480,854 + PP_3090 0.85 +0.2
3,480,854 + PP_3090 0.85 -0.8
3,480,854 + PP_3090 0.85 -0.2
3,480,854 + PP_3090 0.85 -0.1
3,480,854 + PP_3090 0.85 -0.4
3,480,855 - PP_3090 0.85 -0.8
3,480,855 - PP_3090 0.85 -0.0
3,480,855 - PP_3090 0.85 +2.1
3,481,048 + +0.2
3,481,048 + -1.9
3,481,048 + -1.3
3,481,048 + +0.1
3,481,048 + -0.6
3,481,048 + -0.5
3,481,052 + -1.4
3,481,052 + +0.9
3,481,053 - +0.3
3,481,053 - +1.3
3,481,178 + +0.5
3,481,178 + -0.1
3,481,178 + +0.0
3,481,179 - -1.2
3,481,179 - -0.5
3,481,199 + -0.1
3,481,199 + +0.7
3,481,199 + -0.2
3,481,203 - +0.3
3,481,218 + -0.3
3,481,280 - +0.9
3,481,396 + PP_5561 0.20 +1.0
3,481,396 + PP_5561 0.20 +0.2
3,481,506 - PP_5561 0.32 +0.2
3,481,506 - PP_5561 0.32 +0.7
3,481,841 + PP_5561 0.69 +0.8
3,481,841 + PP_5561 0.69 +0.7
3,481,952 - PP_5561 0.81 +0.3
3,482,430 + +0.1
3,482,612 + PP_3091 0.13 -0.2
3,482,613 - PP_3091 0.13 -0.2
3,482,690 + PP_3091 0.15 -1.1
3,482,690 + PP_3091 0.15 +0.1
3,482,690 + PP_3091 0.15 -0.5
3,482,691 - PP_3091 0.15 +0.1
3,482,847 + PP_3091 0.19 +0.6

Or see this region's nucleotide sequence